Scripts and example data for fitting models of background selection with demography and partial-selfing

Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

Repeat-aware polishing genomes assembled using HiFi long reads

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Fast and frugal disk based k-mer counter

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Ultra-fast de novo assembler using long noisy reads