PyTorch original implementation of Cross-lingual Language Model Pretraining.

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

translation-dependent mRNA degradation models

RNA Secondary Structure DataBase

Full-length Ribosome Density Prediction by a Multi-Input and Multi-Output Model

Neural network regression model of translation elongation rate, with DP algorithm to optimize fast coding sequences under model

SRA Tools

RNA-seq aligner

UCSC command line bioinformatic utilities

A tool for bigWig files.

A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.

Using SONAR to understand the sequence motifs effect on T cell mRNA and protein levels

Saluki, a method to predict mRNA half-lives from sequence

Pipeline for Ribosome Profiling Data

A Snakemake pipeline to automate RiboFlow runs at scale.

End-to-end RNA Design using deep reinforcement learning

Ultra-fast and memory-efficient (meta-)genome assembler

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Scripts to download genomes from the NCBI FTP servers

Implementation of Sequence Generative Adversarial Nets with Policy Gradient

Reinforcement Learning for Neural Machine Translation

Large-scale Self-supervised Pre-training Across Tasks, Languages, and Modalities

Repository to track the progress in Natural Language Processing (NLP), including the datasets and the current state-of-the-art for the most common NLP tasks.

NLP上手教程

"Deep Generative Modeling": Introductory Examples

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.