VISTA Laboratory

This runs on the old Macs with Intel and orange and mux (Intel x86_64).

Runs both orange GPUs at vistalab.

container with pbrt-v4 built to run on a Mac with arm processor

This runs on Mux as of June 12, 2025. Created by DAW.

PBRT

Normalize anatomicals to RAS and to acpc registering to MNI or providing AC-PC coordinates.

RTP-preproc runs the MRtrix3 preprocessing pipeline

Runs the RTP pipeline

Flips bvec x, y, or z

Matlab Compiler Runtime for Matlabr2015b

Dockerized Freesurfer without templates, etc. Just BIN and LIB.

DICOM >>> NiFTI conversion using SciTran Data

Dockerized version of FSL's FAST

Docker image that can preprocess diffusion data using the Vistasoft dtiInit pipeline.

Dockerized Freesurfer (v5.3.0)

Image configured to run Freesurfer recon-all.

Containerized bet2 with zipped output.

Runtime for Matlab R2014b

Matlab runtime for Matlab r2013b.

Matlab runtime for 2013a (v8.1)

FSL V5.0 (fsl-core-5.0) image.

CLI for NIMSdata (incl., dicomsort, siemen_multicoil)

PBRT container with spectral branch of pbrt-v2 compiled

Trusty with "dcraw" v9.19 installed.