Lib.rs

› Keywords #bioinformatics #bedtools #genomics #rsomics #bam #gff #fasta

#bed


  1. bed2gtf

    A fast and memory efficient BED to GTF/GFF converter

    v2.2.0 #gtf-gff #bed #gtf #gff

  2. gtars-uniwig

    uniwig: a tool for computing coverage from BED files over genomic intervals

    v0.9.0 200 #genomics #gtars #interval #coverage #computing #bed #python-bindings

  3. genepred

    port for the GenePred format in Rust

    v0.0.16 #gtf-gff #transcript #bioinformatics #bed

  4. xloci

    get sequences from 2bit/fa using bed/gtf/gff

    v0.0.5 #bioinformatics #gtf-gff #bed #bioinformatics-sequence

  5. gxf2bed

    fastest GTF/GFF-to-BED converter chilling around

    v0.3.3 #gtf-gff #convert #gtf #gff #bed

  6. bedpull

    Pull the query sequence from bam or fasta references using a bed file

    v0.2.0 #bioinformatics #bam #bed

  7. tgv

    Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

    v0.3.0 #genome #explore #light #bioinformatics #ratatui #bam #bed #local-cache #bam-file

  8. noodles-bed

    BED (Browser Extensible Data) reader and writer

    v0.34.0 2.4K #bioinformatics #noodles #bed

  9. packbed

    pack a .bed into overlapping components

    v0.0.13 #component #transcript #overlap #bed

  10. filterx

    A command line tool to filter data by using python-like syntax

    v0.4.1 750 #csv #sam #command-line-tool #filter #fastq #fasta #gff #bed #tsv #format-file

  11. gv-core

    Core library for the terminal genome viewer

    v0.3.0 #tgv #genome #viewer #bam-file #alignment #local-cache #bioinformatics #ratatui #bed #pre-built-binaries

  12. bedrs

    Genomic interval library in rust

    v0.2.26 150 #range #bioinformatics #bed

  13. rsomics-intervals

    BED algebra + interval index + GFF/GTF interval extraction for the rsomics-* tool family. Layer A primitive.

    v0.2.0 #genomics #bed #bedtools #interval #bioinformatics

  14. gtars-bbcache

    bbcache: a caching system for BED files on bedbase.org

    v0.5.4 200 #bed #cache #bbcache #file-cache #endpoint #genomics #env-vars #first-access

  15. gskits

    common kits

    v0.15.15 #kit #file-reader #bed #samtools #dna #reverse-complement #bam #fastq #fasta #pbar

  16. choose_your_bed

    High-quality integration for https://supermaker.ai/blog/how-to-make-the-viral-choose-your-bed-videos-with-ai/

    v69.0.38 #bed #choose #comfort #integration #blog #supermaker #integration-for-supermaker #artificial-intelligence #user-preferences #extended-attributes

  17. d4tools

    The CLI utils for D4 file format

    v0.3.9 #d4-format #statistics #input-file #query #bam-file #genome #compression #bed #disk-space #random-access

  18. gia

    set theoretic operations of genomic intervals

    v0.2.23 650 #genomics #interval-set #bioinformatics #bed #set-interval

  19. filterx_info

    The builtin function documentation library for filterx

    v0.4.1 410 #filterx #documentation #fastq #sam #fasta #tsv #bed #gff #csv

  20. d4utils

    The CLI utils for D4 file format

    v0.2.18 #d4-format #statistics #show #quantitative #genome #bed #input-file #disk-space #filesize #random-access

  21. filterx_source

    The source library for filterx

    v0.4.1 500 #filterx #fastq #fasta #sam #tsv #gff #bed #csv

  22. filterx_engine

    The engine library for filterx

    v0.4.1 500 #filterx #fastq #fasta #format #sam #tsv #bed #gff #csv

  23. bed2gff

    BED-to-GFF3 parallel translator

    v0.1.5 380 #bed #gff3 #gff #bed2gff3 #cli

  24. bigbed

    dealing with BigBed files

    v0.2.0 #genomics #binary #bed #dealing #chrom #bioinformatics #browsing #distributed #test-cases #al

  25. syntesuite

    TODO

    v0.6.2 600 #strand #landscape #bed #species #file #genes #infos

  26. exon-bed

    Subcrate of the exon crate for working with BED files

    v0.32.4 #exon #bed #bioinformatics #proteomics #arrow #sql #data-fusion #query-engine

  27. mpileup

    Pile up multiple bam files site by site

    v0.0.28 #bam #up #site #pile #count #bed #fa #indel

  28. gannot

    A small library with limited functionality focused on genome annotation

    v0.1.0 310 #genomics #annotations #genome #limit #gff3 #bed #breaking-change

  29. crussmap

    faster tool to convert genome coordinates between difference reference assemblies. Support file formats: [BED,…]. This project reconstructs the CrossMap…

    v1.0.1 #bed #genome #coordinates #reference #convert #assemblies #speed-performance #convert-file #file-convert #input-file

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  30. filterx_core

    The core library for filterx

    v0.4.1 500 #csv #sam #fastq #fasta #tsv #gff #bed

  31. test262-harness

    A test bed for the ecma 262 test suite

    v0.1.1 #test-suite #testing #test262 #bed #file-path #ecma

  32. bedblocks

    Split a BED file into blocks

    v0.1.0 #bed #block #split #file #genomics