#gff


  1. bed2gtf

    A fast and memory efficient BED to GTF/GFF converter

    v2.2.0 #gtf-gff #bed #gtf #gff

  2. seqa_core

    Object store support for vcf, bam, fasta, bigwig, bigbed, gff, bed, bedgraph, gtf

    v3.1.4 #genomics #amazon-s3 #fasta-vcf #cloud-storage #coordinate-system #big-wig #gff #gtf #bigbed #bed-graph

  3. gtfsort

    An optimized chr/pos/feature GTF/GFF sorter using a lexicographic-based index ordering algorithm written in Rust

    v0.2.4 #gtf-gff #gff #gtf #sorting

  4. noodles-gff

    Generic Feature Format (GFF) reader and writer

    v0.57.0 6.6K #bioinformatics #noodles #gff

  5. gxf2bed

    fastest GTF/GFF-to-BED converter chilling around

    v0.3.3 #gtf-gff #convert #gtf #gff #bed

  6. locus-tui

    A terminal genome browser for BAM files

    v0.2.1 #genomics #bam #bioinformatics #gff #gtf #gtf-gff

  7. filterx

    A command line tool to filter data by using python-like syntax

    v0.4.1 750 #csv #sam #command-line-tool #filter #fastq #fasta #gff #bed #tsv #format-file

  8. toxannotator

    tox annotator for ToxDB

    v0.3.0 #annotator #protein-coding #tox #compare #fasta #gff #strand #genomics #mrna #plotters

  9. araseq

    model genomics

    v0.1.0 #genomics #domain-analyzer #agi #motif #networking #gff #ipr #associations #plant #bioinformatics

  10. filterx_info

    The builtin function documentation library for filterx

    v0.4.1 410 #filterx #documentation #fastq #sam #fasta #tsv #bed #gff #csv

  11. cyanea-io

    File format parsing for the Cyanea bioinformatics ecosystem

    v0.1.0 #sam #bam #bioinformatics #gff #vcf

  12. filterx_source

    The source library for filterx

    v0.4.1 500 #filterx #fastq #fasta #sam #tsv #gff #bed #csv

  13. filterx_engine

    The engine library for filterx

    v0.4.1 500 #filterx #fastq #fasta #format #sam #tsv #bed #gff #csv

  14. bed2gff

    BED-to-GFF3 parallel translator

    v0.1.5 380 #bed #gff3 #gff #bed2gff3 #cli

  15. serde-gff

    https://github.com/Mingun/serde-gff

    v0.3.0 #gff #serialization #bioware #serde #parser

  16. exon-gff

    reading and writing GFF files with Exon

    v0.32.4 #exon #gff #bioinformatics #arrow #proteomics #sql #data-fusion #query-engine

  17. noel

    A GTF/GFF per gene non-overlapping exon length calculator

    v0.2.1 #gtf-gff #exon #length #gff #gtf

  18. gene-seq-intersections

    Count intersections between genes and sequences

    v0.3.1 #genes #sequence #intersection #gff #overlap #blast

  19. filterx_core

    The core library for filterx

    v0.4.1 500 #csv #sam #fastq #fasta #tsv #gff #bed
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  21. tuni

    Unify transcripts across different samples

    v0.1.1 #transcript #gtf-gff #gtf #gff #transcript-assembly

  22. to-trans

    A high-performance transcriptome builder from fasta + GTF/GFF

    v0.2.0 #gtf-gff #gtf #gff #fasta #transcriptome

  23. ncrs

    A lightweight Rust library for loading and storing nucleic acid sequences (DNA or RNA) and their annotations with minimum dependences

    v0.1.1 #bio #dna-rna #gff #dna #rna

  24. gffkit

    program for gff3 file manipulation

    v0.1.2 #bio #gene #gff #hts

  25. gff_diff

    generate a diff (in JSON format) between two GFF3 files

    v0.1.1 #diff #gff

  26. gxf2chrom

    Everything in .chrom from GTF/GFF

    v0.1.0 #gtf-gff #gtf #gff #convert #chrom

  27. gff

    GFF game format packer/parser library

    v0.1.0 #file-format #packer #game-format #representation #intermediary #games

  28. nwnrs

    Command-line inspection, conversion, packing, unpacking, and NWScript tooling for Neverwinter Nights resources

    v0.0.1 #nwn #gff #nwscript #neverwinter-nights

  29. nwnrs-types

    Neverwinter Nights typed formats, resource systems, and tooling helpers

    v0.0.1 #nwnrs #resources #gff #typed #file-format #neverwinter