noodles-sam
Sequence Alignment/Map (SAM) format reader and writer
aws-sdk-serverlessapplicationrepository
AWS SDK for AWSServerlessApplicationRepository
rammap
An extensible and performant aligner and read mapper
fg-mako
Fast SAM/BAM sorter (installs the
makobinary)
noodles-bam
Binary Alignment/Map (BAM) format reader and writer
yosemite
Asynchronous SAMv3 library
merkurio
Quick k-mer-based FASTA/FASTQ sequence record extraction, and SAM/BAM record filtering plus file annotation with k-mer tags
usls
integrated with ONNXRuntime, providing a collection of ML models
ref-solver
Solve reference genome identification from BAM/SAM headers
salmon-rad
RAD-format schema, record types, and writer for the salmon Rust port (libradicl-backed)
kira-ls-aligner
Unified short- and long-read sequence aligner written in Rust 2024. It combines minimap2-style minimizers and chaining with BWA-MEM2-style exact-match anchoring and output semantics…
sam-subsampler
Two-pass BAM/CRAM subsampler that tags selected reads in place
qbix
Random access to BAM records by read name using a compact .qbi index
filterx
A command line tool to filter data by using python-like syntax
alnstats
A high-performance command-line tool designed to calculate yield and duplicate statistics from BAM, SAM, or CRAM alignment files
rlx-sam3
SAM 3 for RLX
fg-sra
High-performance SRA-to-SAM/BAM converter replacing NCBI sam-dump
bam
that allows to read and write BAM, SAM and BGZIP files, written completely in Rust
kira-bam
High-performance BAM/SAM/CRAM toolkit written in Rust 2024. Drop-in samtools-compatible CLI (view/sort/index/merge/markdup/flagstat) plus a library API for embedding directly into aligners and variant callers.
rlx-sam-ir
Shared SAM / SAM2 mask-decoder IR helpers
rlx-dinov2
DINOv2 ViT encoder for RLX
cigar_collapser
A program that collapses CIGAR strings from SAM/BAM files into shorter human-readable string
converge-embassy-sam-gov
SAM.gov port — US System for Award Management; federal contractor registration
seqair-types
Core types for the seqair bioinformatics library
fg-stitch
Stitch is an aligner for long reads against one or more reference/expected vector/plasmid/construct(s)
fgumi-sam
SAM/BAM record utilities, CIGAR parsing, and read-pair clipping for fgumi
cyanea-io
File format parsing for the Cyanea bioinformatics ecosystem
frame-isa
SAM Instruction Set Architecture - 6-byte opcode definitions for AI systems
filterx_info
The builtin function documentation library for filterx
fg-stitch-lib
Stitch aligner implementation and supporting utilities
filterx_source
The source library for filterx
fg-sra-vdb
Safe Rust wrappers over the NCBI VDB C library
rlx-sam2
SAM 2 (Hiera) for RLX
rlx-sam
Segment Anything Model (SAM v1) for RLX
filterx_engine
The engine library for filterx
varview
sam variant visualizer
optical-embeddings
DeepSeek-OCR - compress text into images
elizaos-plugin-simple-voice
Retro 1980s SAM Text-to-Speech plugin for elizaOS agents
exon-sam
Exon SAM
sampaint
A colouriser for the SAM/BAM file format
secondary_rewriter
Adds SEQ and QUAL fields to secondary alignments from the primary alignment
fg-sra-vdb-sys
Raw FFI bindings to NCBI's libncbi-vdb C library
filter-clipped
A bam/sam util to filter out highly clipped NGS reads from alignment files
friendgrow
Grow your friendships by tracking which friends to see soon
sampicore
🐶 Take a screenshot get a shareable URL
filterx_core
The core library for filterx
sam
A compile time instruction assembler
sam_test_msgs
Example usage of the
ros_msgs_includecrate
vcfscan
vcf visualizer
bam2seq
Extract reads and reconstructed references from a .bam file using CIGAR and MD tags
bamkit
program for bam file manipulation
taubyte-sdk
Taubyte rust SDK to use within the Taubyte VM
sam_crate
my first crate
sam_graphQL
reflective
Hacky compile-time reflection
libsam-rs
safe/sys bindings for SAM text to speech
i2p
I2P client library with a std::net-like API
Try searching with DuckDuckGo.