Lib.rs

› Keywords #bed #bioinformatics #genomics #bam #transcript #genes

#gtf-gff


  1. bed2gtf

    A fast and memory efficient BED to GTF/GFF converter

    v2.2.0 #gtf-gff #bed #gtf #gff

  2. genepred

    port for the GenePred format in Rust

    v0.0.16 #gtf-gff #transcript #bioinformatics #bed

  3. gtfsort

    An optimized chr/pos/feature GTF/GFF sorter using a lexicographic-based index ordering algorithm written in Rust

    v0.2.4 #gtf-gff #gff #gtf #sorting

  4. xloci

    get sequences from 2bit/fa using bed/gtf/gff

    v0.0.5 #bioinformatics #gtf-gff #bed #bioinformatics-sequence

  5. gxf2bed

    fastest GTF/GFF-to-BED converter chilling around

    v0.3.3 #gtf-gff #convert #gtf #gff #bed

  6. locus-tui

    A terminal genome browser for BAM files

    v0.2.1 #genomics #bam #bioinformatics #gff #gtf #gtf-gff

  7. roers

    prepare augmented annotations for single-cell RNA-seq analysis

    v0.4.0 320 #genomics #gtf-gff #sc-rna-seq #augmented-reference #splici

  8. noel

    A GTF/GFF per gene non-overlapping exon length calculator

    v0.2.1 #gtf-gff #exon #length #gff #gtf

  9. grangers

    working with genomic ranges and annotations

    v0.5.0 #genomics #gtf-gff #genes #range #genome-annotation

  10. tuni

    Unify transcripts across different samples

    v0.1.1 #transcript #gtf-gff #gtf #gff #transcript-assembly

  11. to-trans

    A high-performance transcriptome builder from fasta + GTF/GFF

    v0.2.0 #gtf-gff #gtf #gff #fasta #transcriptome

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  12. gxf2chrom

    Everything in .chrom from GTF/GFF

    v0.1.0 #gtf-gff #gtf #gff #convert #chrom