Lib.rs

› Keywords #gff #bioinformatics #gtf-gff #rsomics #bed #bam #genomics

#gtf


  1. bed2gtf

    A fast and memory efficient BED to GTF/GFF converter

    v2.2.0 #gtf-gff #bed #gtf #gff

  2. gtf_splice_index

    A fast, splice-aware index for GTF/GFF annotations enabling efficient transcript and gene lookup for RNA-seq read mapping and quantification

    v0.4.2 #genomics #gtf #rna-seq #bioinformatics #splicing

  3. seqa_core

    Object store support for vcf, bam, fasta, bigwig, bigbed, gff, bed, bedgraph, gtf

    v3.1.4 #genomics #amazon-s3 #fasta-vcf #cloud-storage #coordinate-system #big-wig #gff #gtf #bigbed #bed-graph

  4. gtfsort

    An optimized chr/pos/feature GTF/GFF sorter using a lexicographic-based index ordering algorithm written in Rust

    v0.2.4 #gtf-gff #gff #gtf #sorting

  5. gxf2bed

    fastest GTF/GFF-to-BED converter chilling around

    v0.3.3 #gtf-gff #convert #gtf #gff #bed

  6. noodles-gtf

    Gene Transfer Format (GTF) reader and writer

    v0.53.0 4.9K #bioinformatics #noodles #gtf

  7. locus-tui

    A terminal genome browser for BAM files

    v0.2.1 #genomics #bam #bioinformatics #gff #gtf #gtf-gff

  8. mbf_gtf

    Fast Parser for Ensembl formated GTF Files to Pandas DataFrames

    v0.6.1 280 #ensembl-gtf #parser #gtf

  9. noel

    A GTF/GFF per gene non-overlapping exon length calculator

    v0.2.1 #gtf-gff #exon #length #gff #gtf

  10. exon-gtf

    GTF datasource for Exon

    v0.32.4 #exon #gtf #bioinformatics #data-source #arrow #proteomics #sql #query-engine #data-fusion

  11. gtftools

    A barebones GTF toolkit with fast nom-based IO

    v0.1.9 #parser #bioinformatics #gtf #ensembl #ensembl-gtf

  12. tuni

    Unify transcripts across different samples

    v0.1.1 #transcript #gtf-gff #gtf #gff #transcript-assembly

  13. to-trans

    A high-performance transcriptome builder from fasta + GTF/GFF

    v0.2.0 #gtf-gff #gtf #gff #fasta #transcriptome

  14. gtfjson

    convert GTF files to newline-delim JSON

    v0.1.6 #genomics #gtf #bioinformatics #json-parser

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  15. gxf2chrom

    Everything in .chrom from GTF/GFF

    v0.1.0 #gtf-gff #gtf #gff #convert #chrom