Lib.rs

› Keywords #bioinformatics #genomics #bam #genome #variant #genomics-variant #bed

#vcf

  1. vcfkit-cli

    Fast VCF toolkit (normalize, liftover, filter) — validated against bcftools, built on noodles

    v0.3.0 #genomics #vcf #bioinformatics #genomics-variant #variant

  2. varfish-server-worker

    Rust-based worker for varfish-server

    v0.17.3 #vcf #variant-filtration #worker #query #convert-text #ingest #aggregate #carrier #prefilter #protobuf

  3. varlinker

    human genomics

    v0.4.0 #genomics #annotations #vcf #human #variant #exon #gene #transcript #genomics-variant

  4. annonars

    Genome annotation based on Rust and RocksDB

    v0.44.2 160 #vcf #rocksdb #tsv #genome #annotations

  5. genomicframe-core

    High-performance genomics I/O and interoperability layer

    v0.2.0 #genomics #bam #bioinformatics #vcf #fastq

  6. vcfkit-core

    Core library for vcfkit: VCF normalize, liftover, and filter operations

    v0.3.0 #genomics #vcf #bioinformatics #genomics-variant #variant

  7. genemancer

    Rust CLI toolkit for niche optimized genomics file processing and target-based variant workflows

    v0.2.5 #bam #genomics #vcf #bioinformatics

  8. check_build

    verify a VCF file against hg19 and hg38 references using a streaming, low-memory approach

    v0.4.0 850 #vcf #reference #build-tool #verification #fasta #genome #contig #low-memory #auto-download

  9. holodeck

    Modern NGS read simulator

    v0.2.1 #genomics #vcf #ngs-read #reference #simulation #variant-calling #bed #golden #r2 #ground-truth

  10. aws-sdk-evs

    AWS SDK for Amazon Elastic VMware Service

    v1.29.0 #aws-sdk #deployment #evs #vcf #v-mware #ec2 #vpc #bare-metal #vsphere

  11. convert_genome

    Convert DTC, VCF, or BCF genome files to VCF, BCF, or PLINK 1.9

    v0.1.10 #vcf #genome #convert #reference #input-file #panel #bcf #variant-call-format #genotype #infer

  12. mehari

    Variant effect prediction all in Rust

    v0.43.2 #effect-prediction #transcript #vcf #variant #hgvs #genomics #consequence #vep #predictor #frequencies

  13. aardvark-bio

    Aardvark - A tool for sniffing out the differences in vari-Ants

    v0.10.5 #benchmark #variant #truth #vcf #metrics #aardvark #sniffing #haplotypes #query-set #summary

  14. vcf-reformatter

    Fast VCF file parser and reformatter with VEP and SnpEff annotation support which can output to MAF

    v0.3.0 #vcf #vep #bioinformatics #maf #snpeff

  15. gv-core

    Core library for the terminal genome viewer

    v0.2.0 #tgv #genome #vcf #viewer #local-cache #ratatui #bioinformatics #bam #bam-file #bed

  16. tidyvcf

    command-line tool to convert VCF files to tab/comma separated tables

    v0.7.3 950 #csv #vcf #column #convert #comma-separated #command-line-tool #gz #field-name #vep #lenient

  17. nu_plugin_formats

    An I/O plugin for a set of file formats for Nushell

    v0.112.1 #nu-shell #nu-shell-plugin #file-format #plist #vcf #eml #ics #ini

  18. grumpy

    Genetic analysis in Rust

    v1.1.4 #vcf #gene #genetic-analysis #genome #parser

  19. ferrolens

    A terminal-first review lens for bioinformatics result tables

    v0.1.0 #csv #tui #bioinformatics #vcf

  20. exon-vcf

    Exon VCF

    v0.32.4 #exon #bioinformatics #vcf #proteomics #arrow #sql #data-fusion #query-engine

  21. cyanea-io

    File format parsing for the Cyanea bioinformatics ecosystem

    v0.1.0 #sam #bam #bioinformatics #gff #vcf

  22. gskits

    common kits

    v0.15.15 #kit #file-reader #bed #dna #vcf #reverse-complement #bam #fastq #fasta #samtools

  23. vcf

    VCF Parser

    v0.6.1 #bioinformatics #parser

  24. tracksmith

    A genome visualization tool written in Rust

    v0.1.0 #genomics #bam #bioinformatics #vcf

  25. vcfexpress

    filtering VCF files using Lua expressions

    v0.3.3 #lua #vcf #expression #variant #template #bcf

  26. forgers

    VCF manipulation based on FORGe ranking

    v0.1.1 #vcf #genomics #pangenome #pangenomics #bioinformatics

  27. vcfscan

    vcf visualizer

    v0.1.0 #vcf #vcf-filtering #search #sam #file #visualizer

  28. spdi

    format to describe a genomic variant. This crate provides a library to get an SPDI format representation of a variant and a command-line utility which adds SPDI format output to an input VCF file.

    v0.1.3 #genomics-variant #genomics #vcf #bioinformatics

    29. Try searching with DuckDuckGo.

  29. vcf_add_ids

    Add IDs to VCF records

    v0.1.1 #vcf #genomics

  30. vcf_batcher

    Command-line tool to cut VCF (variant call files) into smaller batches, intended to be used for multiprocessing or distributed computing

    v0.2.1 #vcf #batch #variant-call-file #batching

  31. yealink-phonebook

    vCard to Yealink Remote Phonebook server

    v0.1.1 #vcard #phonebook #yealink #vcf

  32. vcfkit

    program for vcf/bcf file manipulation

    v0.1.1 #vcf #snp #bio #hts

  33. omics-tools

    A suite of programs for interacting with high-throughput sequencing data. e.g. Fastq/Bam/VCF File.

    v0.1.0 #fastq #data #high-throughput #programs #vcf #bam #omics