The KnotProt 2.0 database (the updated version of the KnotProt database) collects information
about proteins which form knots and other entangled structures. New features in KnotProt …

The increasing role of topology in (bio)physical properties of matter creates a need for an
efficient method of detecting the topology of a (bio)polymer. However, the existing tools allow …

The fact that proteins can have their chain formed in a knot is known for almost 30 years.
However, as they are not common, only a fraction of such proteins is available in the Protein …

The availability of 3D protein models is rapidly increasing with the development of structure
prediction algorithms. With the expanding availability of data, new ways of analysis, …

AlphaKnot is a server that measures entanglement in AlphaFold-solved protein models
while considering pLDDT confidence values. AlphaKnot has two main functions: (i) providing …

This article investigates a palatalization process called Surface Velar Palatalization that turns
/kg/ into [k j g j ] before the front vowel e. What would appear to be a trivial rule, kg → k j g j /…

The absence of solvent molecules in high-resolution protein crystal structure models
deposited in the Protein Data Bank (PDB) contradicts the fact that, for proteins crystallized from …

Knotted proteins, although scarce, are crucial structural components of certain protein
families, and their roles continue to be a topic of intense research. Capitalizing on the vast …

Knotted proteins, although scarce, are crucial structural components of certain protein families,
and their roles remain a topic of intense research. Capitalizing on the vast collection of …

… The analysis of Cracow Voicing will fall into place if we make a minimal alteration to
Rubach’s (1996) analysis and use *[±voice] rather than *[+voice] as the constraint deriving Final …