Open Source Linux Data Visualization Software - Page 8
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Cleaver
30-second slideshows for hackers
Cleaver is a one-stop-shop for generating HTML presentations in record time. Using some spiced up markdown, you can produce good-looking, interactive presentations with a just a few lines of text. Cleaver supports several basic options that allow you to further customize the look and feel of your presentation, including author info, stylesheets, and custom templates. Cleaver has substantial theme support to give you more fine-grained control over your presentation, similar to options. Instead of manually specifying a stylesheet, template, layout, and others, you can specify a single theme containing each of these assets. Cleaver comes with a stylesheet that looks good by default, but you can extend it at your heart's desire. Themes are prepackaged options you can invoke from a directory, URL, or even a GitHub repository. -
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Clustergrammer
An interactive heatmap visualization built using D3.js
Clustergrammer is a visualization library built using D3.js that enables intuitive interaction with high-dimensional data. Clustergrammer was built with biological data in mind. Clustergrammer is a web-based tool for visualizing high-dimensional data (e.g. a matrix) as an interactive and shareable hierarchically clustered heatmap. Clustergrammer's front end (Clustergrammer-JS) is built using D3.js and its back-end (Clustergrammer-PY) is built using Python. Clustergrammer produces highly interactive visualizations that enable intuitive exploration of high-dimensional data and has several biology-specific features (e.g. enrichment analysis, see Biology-Specific Features) to facilitate the exploration of gene-level biological data. -
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Cytoscape.js
Graph theory library for visualization and analysis
A fully featured graph library written in pure JS. Permissive open source license (MIT) for the core Cytoscape.js library and all first-party extensions. Used in commercial projects and open-source projects in production. Designed for users first, for both frontfacing app usecases and developer usecases. Highly optimized. Compatible with All modern browsers. Legacy browsers with ES5 and canvas support. ES5 and canvas support are required, and feature detection is used for optional performance enhancements. Browsers circa 2012 support ES5 fully: IE10, Chrome 23, Firefox 21, Safari 6 (caniuse). Browsers with partial but sufficient ES5 support also work, such as IE9 and Firefox 4. The documentation and examples are not optimized for old browsers, although the library itself is. Some demos may not work in old browsers in order to keep the demo code simple. -
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DFTK.jl
Density-functional toolkit
The density-functional toolkit, DFTK for short, is a collection of Julia routines for experimentation with plane-wave density-functional theory (DFT). The unique feature of this code is its emphasis on simplicity and flexibility with the goal of facilitating algorithmic and numerical developments as well as interdisciplinary collaboration in solid-state research. -
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EAGO.jl
A development environment for robust and global optimization
EAGO is an open-source development environment for robust and global optimization in Julia. EAGO is a deterministic global optimizer designed to address a wide variety of optimization problems, emphasizing nonlinear programs (NLPs), by propagating McCormick relaxations along the factorable structure of each expression in the NLP. Most operators supported by modern automatic differentiation (AD) packages (e.g., +, sin, cosh) are supported by EAGO and a number of utilities for sanitizing native Julia code and generating relaxations on a wide variety of user-defined functions have been included. Currently, EAGO supports problems that have a priori variable bounds defined and have differentiable constraints. -
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ECharts
A powerful, interactive charting and visualization library for browser
ECharts is a free and open source charting and visualization library that gives you an easy way to add interactive, intuitive, custom charts to your commercial products, projects, presentations and more. It offers a rich set of features that includes rendering ability for ten-million-level data, Wechart and Powerpoint support, multi-dimension data analysis, and more. It also has a number of extensions for various applications. ECharts is written in pure JavaScript, and is based on zrender, a new and lightweight canvas library. -
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GDAL.jl
Thin Julia wrapper for GDAL - Geospatial Data Abstraction Library
Julia wrapper for GDAL - Geospatial Data Abstraction Library. This package is a binding to the C API of GDAL/OGR. It provides only a C style usage, where resources must be closed manually, and datasets are pointers. Other packages can build on top of this to provide a more Julian user experience. See for example ArchGDAL.jl. Most users will want to use ArchGDAL.jl instead of using GDAL.jl directly. -
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GemGIS
Spatial data processing for geomodeling
GemGIS is a Python-based, open-source geographic information processing library. It is capable of preprocessing spatial data such as vector data (shape files, geojson files, geopackages,…), raster data (tif, png,…), data obtained from online services (WCS, WMS, WFS) or XML/KML files (soon). Preprocessed data can be stored in a dedicated Data Class to be passed to the geomodeling package GemPy in order to accelerate the model-building process. Postprocessing of model results will allow export from GemPy to geoinformation systems such as QGIS and ArcGIS or to Google Earth for further use. -
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Go Recipes
Collection of handy tools for Go projects
Visualize the distribution of code coverage in your project. This helps to identify code areas with high and low coverage. Useful when you have a large project with lots of files and packages. This 2D image-hash of your project should be more representative than a single number. For each module, the node representing the greatest version (i.e., the version chosen by Go's minimal version selection algorithm) is colored green. Other nodes, which aren't in the final build list, are colored grey — by the official Go team. Use to find unexpected dependencies or visualize the project. Works best for a small number of packages, for large projects use grep to narrow down subgraph. Collect all the licenses or check if you can use the project for example in a proprietary or commercial environment. Tell Go compiler which versions of upstreams to include in your build. Tell all users of your module how to deal with versions of your module. -
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Graffle
Simple GraphQL Client for JavaScript
Graffle is a simple, minimal, and extensible GraphQL client for JavaScript, designed to provide type-safe queries and run in various environments. -
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IntervalArithmetic.jl
Library for validated numerics using interval arithmetic
IntervalArithmetic.jl is a Julia package for validated numerics in Julia. All calculations are carried out using interval arithmetic where quantities are treated as intervals. The final result is a rigorous enclosure of the true value. We are working towards having the IntervalArithmetic library be conformant with the IEEE 1788-2015 Standard for Interval Arithmetic. To do so, we have incorporated tests from the ITF1788 test suite. -
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JILL.py
A cross-platform installer for the Julia programming language
The enhanced Python fork of JILL, Julia Installer for Linux (and every other platform), Light. -
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP server, and translated to Julia data structures by Julia. The results of function calls are likewise translated back to R. Complex Julia structures can either be used by reference via proxy objects in R or fully translated to R data structures. -
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Learn Julia the Hard Way
Learn Julia the hard way
The Julia base package is pretty big, although at the same time, there are lots of other packages around to expand it with. The result is that on the whole, it is impossible to give a thorough overview of all that Julia can do in just a few brief exercises. Therefore, I had to adopt a little 'bias', or 'slant' if you please, in deciding what to focus on and what to ignore. Julia is a technical computing language, although it does have the capabilities of any general-purpose language and you'd be hard-pressed to find tasks it's completely unsuitable for (although that does not mean it's the best or easiest choice for any of them). Julia was developed with the occasional reference to R, and with an avowed intent to improve upon R's clunkiness. R is a great language, but relatively slow, to the point that most people use it to rapidly prototype, and then implement the algorithm for production in Python or Java. Julia seeks to be as approachable as R but without the speed penalty. -
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LineSearches.jl
Line search methods for optimization and root-finding
Line search methods for optimization and root-finding. This package provides an interface to line search algorithms implemented in Julia. The code was originally written as part of Optim, but has now been separated out to its own package. -
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MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
MIRT.jl is a collection of Julia functions for performing image reconstruction and solving related inverse problems. It is very much still under construction, although there are already enough tools to solve useful problems like compressed sensing MRI reconstruction. Trying the demos is a good way to get started. The documentation is even more still under construction. -
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Makie
Interactive data visualizations and plotting in Julia
Makie is an interactive data visualization and plotting ecosystem for the Julia programming language, available on Windows, Linux, and Mac. The backend packages GLMakie, WGLMakie, CairoMakie and RPRMakie add different functionalities: You can use Makie to interactively explore your data and create simple GUIs in native Windows or web browsers, export high-quality vector graphics or even raytrace with physically accurate lighting. Choose one or more backend packages: GLMakie (interactive OpenGL in native OS windows), WGLMakie (interactive WebGL in browsers, IDEs, notebooks), CairoMakie (static 2D vector graphics and images), and RPRMakie (raytracing). Each backend re-exports all of Makie.jl so you don't have to install or load it explicitly. -
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Pluto.jl
Simple reactive notebooks for Julia plutojl.org
We are on a mission to make scientific computing more accessible and fun. Writing a notebook is not just about writing the final document, Pluto empowers the experiments and discoveries that are essential to getting there. -
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ReactiveMP.jl
High-performance reactive message-passing based Bayesian engine
ReactiveMP.jl is a Julia package that provides an efficient reactive message passing based Bayesian inference engine on a factor graph. The package is a part of the bigger and user-friendly ecosystem for automatic Bayesian inference called RxInfer. While ReactiveMP.jl exports only the inference engine, RxInfer provides convenient tools for model and inference constraints specification as well as routines for running efficient inference both for static and real-time datasets. -
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Reduce.jl
Symbolic parser for Julia language term rewriting using REDUCE algebra
REDUCE is a portable general-purpose computer algebra system. It is a system for doing scalar, vector and matrix algebra by computer, which also supports arbitrary precision numerical approximation and interfaces to gnuplot to provide graphics. It can be used interactively for simple calculations (as illustrated in the screenshot below) but also provides a full programming language, with a syntax similar to other modern programming languages. REDUCE supports alternative user interfaces including Run-REDUCE, TeXmacs and GNU Emacs. REDUCE (and its complete source code) is available free of charge for most common computing systems, in some cases in more than one version for the same machine. The manual and other support documents and tutorials are also included in the distributions. -
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Remotery
Single C file, Realtime CPU/GPU Profiler with Remote Web Viewer
Remotery is a real-time CPU/GPU profiler implemented as a single C file, providing developers with immediate insights into the performance of their applications. It features a remote web-based viewer that runs in browsers like Chrome, Firefox, and Safari, allowing for cross-platform performance analysis. Remotery supports profiling multiple threads and GPU contexts, offering a comprehensive view of an application's performance characteristics. -
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SuiteSparseGraphBLAS.jl
Sparse, General Linear Algebra for Graphs
A fast, general sparse linear algebra and graph computation package, based on SuiteSparse:GraphBLAS. -
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Sweetviz
Visualize and compare datasets, target values and associations
Sweetviz is an open-source Python library that generates beautiful, high-density visualizations to kickstart EDA (Exploratory Data Analysis) with just two lines of code. Output is a fully self-contained HTML application. The system is built around quickly visualizing target values and comparing datasets. Its goal is to help quick analysis of target characteristics, training vs testing data, and other such data characterization tasks. Shows how a target value (e.g. "Survived" in the Titanic dataset) relates to other features. Sweetviz integrates associations for numerical (Pearson's correlation), categorical (uncertainty coefficient) and categorical-numerical (correlation ratio) datatypes seamlessly, to provide maximum information for all data types. Automatically detects numerical, categorical and text features, with optional manual overrides. min/max/range, quartiles, mean, mode, standard deviation, sum, median absolute deviation, coefficient of variation, kurtosis, skewness. -
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The Julia Programming Language
High-level, high-performance dynamic language for technical computing
Julia is a fast, open source high-performance dynamic language for technical computing. It can be used for data visualization and plotting, deep learning, machine learning, scientific computing, parallel computing and so much more. Having a high level syntax, Julia is easy to use for programmers of every level and background. Julia has more than 2,800 community-registered packages including various mathematical libraries, data manipulation tools, and packages for general purpose computing. Libraries from Python, R, C/Fortran, C++, and Java can also be used. -
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VoronoiFVM.jl
Solution of nonlinear multiphysics partial differential equations
Solver for coupled nonlinear partial differential equations (elliptic-parabolic conservation laws) based on the Voronoi finite volume method. It uses automatic differentiation via ForwardDiff.jl and DiffResults.jl to evaluate user functions along with their jacobians and calculate derivatives of solutions with respect to their parameters.