Open Source Java Formats and Protocols

The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.

Apache Guacamole is a clientless remote desktop gateway. It supports standard protocols like VNC, RDP, and SSH. We call it clientless because no plugins or client software are required. Thanks to HTML5, once Guacamole is installed on a server, all you need to access your desktops is a web browser.

basE91 is an advanced method for encoding binary data as ASCII characters. It is similar to UUencode or base64, but is more efficient. The overhead produced by basE91 depends on the input data. It amounts at most to 23% and can range down to 14%.

A software toolkit for using the EPCglobal Low Level Reader Protocol (LLRP) to communicate with conforming RFID readers.

VTD-XML is the next generation XML parser/indexer/editor/slicer/assembler/xpath-engine that goes beyond DOM, SAX and PULL in performance, memory usage, and ease of use.

This project develops an open source editor for Clavia Nord Modular and Micro Modular synthesizers.

This project is moved to: https://github.com/libyal/libewf This site still contains contibs.

SmartSlog (Smart Space Ontology) is a software/application development kit (SDK or ADK) for programming Smart-M3 agents (Knowledge Processors, KPs) that consume/produce smart space content according with its high-level ontological representation. SmartSlog applies the code generation approach: given an OWL ontology description, the ontology programming library is produced. The latter provides API to access the smart space via a Smart-M3 Semantic Information Broker (SIB) and data structures and functions to represent and maintain locally in KP code all ontology classes, relations, properties, and individuals. Since 2012 the project is supported by grant KA179 of Karelia ENPI programme, http://kareliaenpi.eu/ More information about project: http://oss.fruct.org/wiki/SmartSlog Smart-M3 on Wikipedia: http://en.wikipedia.org/wiki/Smart-M3

DIET-PC (DIskless Embedded Technology Personal Computer) is a software kitset enabling IT professionals to build an open source GUI appliance based on commodity x86 (PC), PowerPC (Mac) or ARM (handheld) hardware, using an embedded Linux methodology.

A P2P overlay construction toolkit, which supports routing algorithm researchers in addition to application developers. It provides multiple routing (DHT) algorithms such as Chord, Kademlia, Koorde, Pastry and Tapestry, and a distributed environment emu

Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files

A service-oriented, single-source, Java integration server with virtual Service Stores(TM) that expose services via web services, HTTP and more. Service Flows provide process automation. Mainframe, database, email, web, soap & ftp adapters are included.

EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code if needed. It is also designed to simplify the programming of input output routines in different programming languages. In a nutshell an EBF file is a collection of data objects. Each data object is specified by a unique name and a single file can have multiple data objects. Each data object is preceded by a meta-data or header which describes the binary data associated with it. Among other things, this header allows the files to be portable across systems with different endianess.

Tpl makes it easy to serialize your C data using just a handful of API functions. The data is stored in its native binary form for maximum efficiency. C, Perl and XML supported. Data is portable across CPU types and OS's from Unix to Mac to Windows.

APEX Tools is a collection of utilities used in conjunction with the processing of airborne hyperspectral data developed for the ESA-Prodex supported Airborne Prism EXperiment (APEX).

A generic hierarchical file format. BHM can be seen as the binary equivalent of XML. It allows flexible hierarchies of any type of data, in a platform-independent way. BHM however trades XML's readability for compactness and speed of processing.

Cross-programming-language object serialisation. The library uses a schema to write object networks to, and create object networks from, a file (eg XML). Written in Java with ports to C and C++ to follow. Features include file recovery and versioning.

COLLADA Refinery is a GUI-based application for creating content pipelines for 3D assets using modular components called conditioners. Contact a project admin to become a developer!

The tool putting HTML/XHTML documents into the Lotus Notes/Domino R5, R6 or R7 databases. The HTML code is aggregated in defined field of document, including files of the resources. Currently is only supported Polish language.

This project aims to replace the multimedia server application for the Gateway, GoVideo, and NetGear DVD players & set-top devices. The new server software aims to be more organized and support a wider variety of formats than Digital 5's original.

Software to allow hardsid card to act as a MIDI instrument running on a Linux platform. This project will use the existing hardsid driver for Linux (http://sourceforge.net/projects/hardsid). See also www.hardsid.com.

Controlling Model Railroad via Networks "Lanbahn" Concepts - intelligent end devices - all with a network, wlan or other sophisticated interface. - can be operated without a central station - no complex binary protocols - communications via multicast UDP messages - decoders can advertise their capabilities via zeroconf/avahi/bonjour protocol. - raspberry pi as one hardware platform - tinkerforge IO bricklets for turnout and signal control

LMY image codec and tools for small, 16-bit (or higher) displays on devices with limited resources. Image file size and quality rival GIF, PNG, and JPEG, but decompression is much less complex. Used commercially by Lower Mars. C/C++ and Java/j2ME include

Hardware controller software for electronic music, games and special needs users. - Firmware for NXP ARM - USB data transfer to host with a custom protocol - Open Sound Control server on host (Mac or Win) for access to device data and device control.

NTW is a cross-platform client/server protocol and widget toolkit that allows efficient remote operation, even over slow networks. Its goal is to be able to serve hundreds of remote clients with a single inexpensive server.