Browse free open source Perl Simulation Software and projects below. Use the toggles on the left to filter open source Perl Simulation Software by OS, license, language, programming language, and project status.

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  • 1
    ALC (Automated Layer Construction) is a computer program that highly simplifies the building of reduced modular models of signaling systems, according to the layer-based approach.
    Downloads: 2 This Week
    Last Update:
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  • 2
    Mendel’s Accountant
    Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.
    Downloads: 1 This Week
    Last Update:
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  • 3
    SunlightCBM is a suite of perl scripts for constraint-based modelling and flux-balance analysis in metabolic networks.
    Downloads: 1 This Week
    Last Update:
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  • 4
    Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.
    Downloads: 1 This Week
    Last Update:
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  • 5
    Allosteric Network Compiler
    A rule-based modelling framework for allosteric proteins and biochemical networks.
    Downloads: 0 This Week
    Last Update:
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  • 6
    Downloads: 0 This Week
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  • 7
    Elastic network models (ENMs) have been shown to generate the dominant functional equilibrium motions of biomolecules quickly and efficiently. MAVEN simplifies ENM generation, allows for diverse models to be used, and facilitates useful analyses.
    Downloads: 0 This Week
    Last Update:
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  • 8
    Simulator of virtual animals made up of biological neural networks for research in the Computational Neuroscience field.
    Downloads: 0 This Week
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  • 9
    Neurospaces is a development center for tools in computational neuroscience. See http://www.neurospaces.org/
    Downloads: 0 This Week
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  • 10
    Plotamber is a Perl script for an easy and automated plotting of properties derived from molecular dynamics or minimization calculations done with Amber, NAMD or Charmm.
    Downloads: 0 This Week
    Last Update:
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  • 11
    SNP ratio test
    The SNP ratio test can assess significance of enrichment of significant associations in genome-wide association studies. Tests can be applied to pathways such as KEGG/GO, or user-defined pathways to test specific hypotheses. See link below for more.
    Downloads: 0 This Week
    Last Update:
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  • 12
    Given a reference sequence, simhtsd will create a large set of short nucleotide reads, simulating the output from today's high-throughput DNA sequencers, such as the Illumina Genome Analyzer II.
    Downloads: 0 This Week
    Last Update:
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  • 13

    infix2pharmml

    Converter between mathematical infix notation and PharmML math markup.

    PharmML is a markup for pharmacometrics markup language documented at http://pharmml.org/. This project provides a converter between the conventional mathematical infix notation and the math markup used by PharmML. The online version has been disabled. Please download for offline use.
    Downloads: 0 This Week
    Last Update:
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