Pepgrep

Tool for peptide MS2 pattern matching in MS tandem dataset

Brought to you by: igor-ch

Downloads: 1 This Week

Last Update: 2014-04-03

Email in envelope

Get an email when there's a new version of Pepgrep

pepgrep offers a quick and friendly way to examine MS tandem output data by finding a spectral pattern matching selected peptide sequence. It is database-free command-line utility that uses Peptide-to-MS2 scoring algorithm. The Peptide-to-MS2 pattern matching can accumulate dozens of mass offsets corresponding to a variety of Post-Translational Modifications. Decoy peptide sequences are used with the tested peptide sequence to reduce false-positive results. Read article at: http://www.sciencedirect.com/science/article/pii/S1672022913000302

Project Activity

See All Activity >

Follow Pepgrep

Pepgrep Web Site

Other Useful Business Software

MongoDB Atlas runs apps anywhere Icon

MongoDB Atlas runs apps anywhere

Deploy in 115+ regions with the modern database for every enterprise.

MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.

Start Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of Pepgrep!

Additional Project Details

Registered

2013-06-21

Report inappropriate content

Recommended Projects

Comet MS/MS search engine
September 2021: the code repository has migrate to https://github.com/UWPR/Comet Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet...
CS-AMPPred
This program reads a fasta file specified by -i option, then, converts it to SVM Light format, further runs the classification module of SVM Light and then evaluate the predictions. The support vector machine models were based on 310 antimicrobial peptide sequences extracted from...
Fingerprint Recognition System
The proposed filter-based algorithm uses a bank of Gabor filters to capture both local and global details in a fingerprint as a compact fixed length FingerCode. The fingerprint matching is based on the Euclidean distance between the two corresponding FingerCodes and hence is extremely fast. We...
MegaTunix Tuning Software
MegaTunix is a cross-platform tuning application for some of the available DIY Fuel Injection controllers, including the MegaSquirt (MS1, MS1-Extra, MS2 and MS2-Extra) as well as the LibreEMS EFI system and the JimStim ECU stimulator/development tool.
AUDACITY
AUDACITY is novel computational approach for the identification of Runs of Homozygosity by using VCF files from whole-exome and whole-genome sequencing data generated by second generation sequencing technologies. AUDACITY is a tool integrating novel RoH detection algorithm and autozygosity...