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import os
import copy
import pytest
raw_path = os.path.abspath(os.path.join('.', __file__, '..', '..'))
if raw_path not in os.sys.path:
os.sys.path.append(raw_path)
import bioxtasraw.RAWAPI as raw
@pytest.fixture(scope="package")
def old_settings():
settings = raw.load_settings(os.path.join('.', 'data', 'settings_old.cfg'))
return settings
@pytest.fixture(scope="package")
def gi_sub_profile():
profile = raw.load_profiles([os.path.join('.', 'data',
'glucose_isomerase.dat')])[0]
return profile
@pytest.fixture(scope="package")
def sans_profile():
profile = raw.load_profiles([os.path.join('.', 'data',
'sans_data.dat')])[0]
return profile
@pytest.fixture(scope="package")
def gi_gnom_ift():
ift = raw.load_ifts([os.path.join('.', 'data',
'glucose_isomerase.out')])[0]
return ift
@pytest.fixture(scope="package")
def gi_bift_ift():
ift = raw.load_ifts([os.path.join('.', 'data',
'glucose_isomerase.ift')])[0]
return ift
@pytest.fixture(scope="package")
def gi_dift_ift():
ift = raw.load_ifts([os.path.join('.', 'data',
'glucose_isomerase_dift.ift')])[0]
return ift
@pytest.fixture(scope="package")
def gi_pdb2sas_modelonly_ift():
ift = raw.load_ifts([os.path.join('.', 'data',
'gi_pdb2mrc_modelonly.ift')])[0]
return ift
@pytest.fixture(scope="package")
def gi_pdb2sas_fit_ift():
ift = raw.load_ifts([os.path.join('.', 'data',
'gi_pdb2mrc_fit.ift')])[0]
return ift
@pytest.fixture(scope="package")
def series_dats():
series = raw.load_series([os.path.join('.', 'data',
'series_new_dats.hdf5')])[0]
return series
@pytest.fixture(scope="package")
def series_images():
series = raw.load_series([os.path.join('.', 'data',
'series_new_images.hdf5')])[0]
return series
@pytest.fixture(scope="function")
def clean_gi_sub_profile(gi_sub_profile):
return copy.deepcopy(gi_sub_profile)
@pytest.fixture(scope='package')
def bsa_series_profiles():
filenames = [os.path.join('.', 'data', 'series_dats',
'BSA_001_{:04d}.dat'.format(i)) for i in range(10)]
profiles = raw.load_profiles(filenames)
return profiles
@pytest.fixture(scope="package")
def temp_directory(tmp_path_factory):
return tmp_path_factory.mktemp('raw')
@pytest.fixture(scope="package")
def bsa_series():
series = raw.load_series([os.path.join('.', 'data',
'BSA_001.hdf5')])[0]
return series
@pytest.fixture(scope="package")
def series_sasbdb_keywords():
series = raw.load_series([os.path.join('.', 'data',
'series_with_sasbdb_keywords.hdf5')])[0]
return series
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