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Commits on Jan 22, 2026

• Update README.md: Simplify installation section and reference INSTALLATION.md

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• Add INSTALLATION.md: Comprehensive installation guide with CUDA version documentation

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• Fix: Separate docs dependencies to resolve Jinja2 version conflict

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• Add pyproject.toml: Define UQDD as proper pip-installable package

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Commits on Dec 15, 2025

• Cleanup: remove unnecessary configuration option for variable display in mkdocs.yml

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• Merge pull request #6 from CDDLeiden/dev/cleanup

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• Cleanup: add pytest configuration and shared fixtures for model tests

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• Cleanup: enhance model handling and metrics calculations for improved clarity and test compatibility

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• Cleanup: remove commented-out code and streamline script logic in papyrus_prepare_example.sh

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• Cleanup: update .gitignore to include backup and IDE backup directories

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• Cleanup: add documentation files for UQDD package modules and enhance navigation structure

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• Cleanup: enhance module docstrings for clarity and organization across the UQDD package

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• Cleanup: update hatch pattern for time in constants.py for clarity

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Commits on Dec 14, 2025

• Cleanup: enhance module docstrings and improve parameter descriptions across multiple files

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• Cleanup: rename result files for consistency in the project structure

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• Cleanup: rename result files for consistency in the project structure

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• Cleanup: update environment configuration files with new package versions and additions

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Commits on Dec 12, 2025

• Merge pull request #5 from CDDLeiden/dev/cleanup

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• Cleanup: add unit tests for Papyrus data processing functions in test_data_papyrus.py

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• Cleanup: remove unused TDC classification metrics function from utils_metrics.py

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• Cleanup: add openpyxl to environment configuration files

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• Cleanup: fix environment variable name for PyTorch configuration

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• Cleanup: enhance package documentation and logging in UQDD initialization

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• Cleanup: Cleaning up notebooks and metrics_analysis.py file.

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• Cleanup: update environment file paths in installation guide

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• Cleanup: standardize environment file paths and update dependencies in README and YAML files

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• Cleanup: move files and standardize path handling in scripts model_reassessment.py, metrics_stats_significance.py, metrics_analysis.py

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• Cleanup: reorganize imports and standardize file paths for reassessment module

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• Refactor: update file paths to be relative to the repository root

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• Add core analysis and constants modules for metrics and statistical analysis

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• REstructuring to loaded functionalities from uqdd

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• Cleanup: standardize code formatting and improve documentation clarity

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Commits on Dec 11, 2025

• Update CONTRIBUTING.md: specify the correct Conda environment file for Linux setup

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• Update environment files: add cmake, mapie, and pandas-stubs dependencies

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• Update tags.md: reorganize content by tag for improved navigation

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