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Commits on Jun 12, 2026

• Updated relative paths; tweaked READMEs; added PC-ATAC site lists

  

  Robert Patton

  committed
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Commits on Mar 4, 2026

• making GC bias optional

  

  Robert Patton

  committed
  e288dbf

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Commits on Jan 22, 2026

• math formatting

  

  Robert Patton

  committed
  f9ca64f

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• math formatting

  

  Robert Patton

  committed
  d5e4e7a

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• README adjust

  

  Robert Patton

  committed
  f812040

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• Updated composite mode to use a ratio of sums (weighted by sqrt(N_raw)) to better account for noise in ULP, and some changes to plotting (true bootstrapping)

  

  Robert Patton

  committed
  eb4571b

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Commits on Jan 14, 2026

• plotting issue with many samples

  

  Robert Patton

  committed
  15af96f

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• README

  

  Robert Patton

  committed
  a33f564

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• license year

  

  Robert Patton

  committed
  487af9e

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• readme

  

  Robert Patton

  committed
  4fe1716

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• removed .github/workflows

  

  Robert Patton

  committed
  49d179d

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• Clean-up and README edits for the next major release, the true 2.0.0

  

  Robert Patton

  committed
  bbee3e0

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Commits on Jan 13, 2026

• test

  

  Robert Patton

  committed
  64de3b3

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• Nextflow initital implementation for containerization

  

  Robert Patton

  committed
  2e0e5d5

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Commits on Feb 27, 2025

• readme

  

  Robert Patton

  committed
  21d20b9

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• readme

  

  Robert Patton

  committed
  95794c8

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• readme

  

  Robert Patton

  committed
  d9d0bcc

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• testing README

  

  Robert Patton

  committed
  584cc12

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Commits on Feb 25, 2025

• Updating README and environment (Python 3.9, no Anaconda dependency)

  

  Robert Patton

  committed
  5049a32

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Commits on Aug 16, 2024

• changed entropy calculation to perform maximum entropy normalization

  

  Robert Patton

  committed
  ee1afbb

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Commits on Aug 15, 2024

• missed an array re-shaping

  

  Robert Patton

  committed
  35d5904

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Commits on Aug 14, 2024

• Just merging the license.

  

  Robert Patton

  committed
  52818b9

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• fixed bug in MAD calculation

  

  Robert Patton

  committed
  1dc79d8

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Commits on Jun 6, 2024

• Update README.md

  denniepatton

  authored
  6a20e55

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• Update LICENSE

  denniepatton

  authored
  c2b5e98

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Commits on May 31, 2024

• README caveat

  

  Robert Patton

  committed
  e1c6ef2

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Commits on May 17, 2024

• circle-cut that logo

  

  Robert Patton

  committed
  5d49593

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Commits on May 10, 2024

• fiddling

  

  Robert Patton

  committed
  7eba9de

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Commits on May 8, 2024

• Still troubleshooting HD panel subtraction . . .

  

  Robert Patton

  committed
  49a3c1a

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Commits on May 1, 2024

• removed pillow, causing vulnerability

  

  Robert Patton

  committed
  11697ef

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• README

  

  Robert Patton

  committed
  ed4236d

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• Updates to configs, triton_plotters.py, panel subtraction handling, and README

  

  Robert Patton

  committed
  cb47d86

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Commits on Apr 26, 2024

• Fixed tfx handling in snakefile and made absolute panel paths in config

  

  Robert Patton

  committed
  c34f1da

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• readme

  

  Robert Patton

  committed
  a3933dd

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• Update to Triton v0.3.0 - methylation removed, sped up, reporting frag ends now, still play testing the hd panel subtraction functionality!

  

  Robert Patton

  committed
  7e20768

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