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Commits on Mar 12, 2020

• change txt file output handling

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Commits on Nov 30, 2018

• Merge branch 'master' of https://github.com/julienrichardalbert/MEA

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• update dist

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• update setting.sh to fix automatic downloads

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Commits on Jun 29, 2018

• update READme with link to published paper

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Commits on Apr 3, 2018

• update dist tar

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• add notes that recommend modifying --genomeSuffixLengthMax

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• remove --outFilterType BySJout from STAR params

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Commits on Mar 29, 2018

• update dist tar

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• Merge branch 'master' of https://github.com/julienrichardalbert/MEA

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• update mea.config

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• update mea.config to enable user-defined java VM heap sizes

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Commits on Mar 23, 2018

• increase max JVM heap size to 54G from 8G

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• increase max JVM heap size to 54G from 8G

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Commits on Mar 22, 2018

• update setting.sh sed chr file

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Commits on Mar 20, 2018

• update createGenome

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• Reorder reference genome fasta to resolve STAR index bug

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• Corrected sed command for .sizes file

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Commits on Jan 23, 2018

• forgot to add header..

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• fixed TSS coordinates for hg19

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Commits on Jan 10, 2018

• Update README.md again

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• Update README.md

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  5d37c96

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• Finalize pipeline additions

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• Finalize Dockerfile

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Commits on Jan 9, 2018

• fix minor bug

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• small bug fix

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  7e1ed7b

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• Fixed tool dir bug

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• fix entrypoint Docker

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• beyond

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• lost

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• losing my mind

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• delete and reset the dist directory

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• TAR

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• angry

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• remove

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