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Commits on Jun 15, 2026

• Update README.md

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• Update nextflow.config

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• Update README.md

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• Update README.md

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• Update README.md

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• Update change_log.txt

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• Merge pull request #9 from ndeimler99/inheritance_mode

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Commits on Jun 12, 2026

• updates schema for integration into epi2me

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• updated nextflow.config

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• included inheritance analysis into TARPON via --inheritance_mode

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Commits on Jun 11, 2026

• Merge branch 'inheritance_mode'

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• finalized switch to pandas dataframes and single stat output file for clustering and variant analysis resultsj

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Commits on Jun 10, 2026

• Update change_log.txt

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• changed all file loading to pandas based where relevant

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Commits on Jun 1, 2026

• updated readme

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• removed methylation from epi2me incorporation

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Commits on May 13, 2026

• Update README.md

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• Merge branch 'main' of github.com:ndeimler99/TArPON

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• updated version to 2.1.1 and removed methylation analysis option now that TELOMOD is up and running

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Commits on May 7, 2026

• Delete LICENSE/NANOPORE.txt

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Commits on Mar 20, 2026

• Merge branch 'main' of github.com:ndeimler99/TArPON

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• updated citation in workflowmain.groovy lib script

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Commits on Feb 12, 2026

• Update README.md

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Commits on Jan 26, 2026

• added levensthein distance options for telomere cluster assignment

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Commits on Dec 30, 2025

• updated getVersion process to include more python packages

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Commits on Dec 9, 2025

• Merge branch 'main' of github.com:ndeimler99/TArPON

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• added memory check to alignment process

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Commits on Nov 4, 2025

• Update README.md

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Commits on Oct 29, 2025

• added paterntiy assignment of telomeres to extra tools directory

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Commits on Oct 27, 2025

• updated number of threads to only use max number of cores available and added in parameter validation a print statement to inform the user

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• test update threads to max of machine or --threads

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Commits on Oct 14, 2025

• updated version numbers

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• Update change_log.txt

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• Merge pull request #8 from ndeimler99/methylation

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• updated nextflow schema for methylation boolean

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