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Commits on May 29, 2026

• Merge pull request #8024 from SaimMomin12/tools/multiqc-plugins

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  bgruening

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• FeatureCounts: Bug Fix (#8040)

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  SaimMomin12

  authored
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• Lint fix: artic (#8031)

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  SaimMomin12

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• prokka: linter fixes (#8033)

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  bernt-matthias

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Commits on May 28, 2026

• Make asserts more specific

  SaimMomin12

  committed
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• Lint fix: anndata2ri (#8029)

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  SaimMomin12

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• plink: linter and othe fixes (#8032)

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  bernt-matthias

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Commits on May 27, 2026

• hicBuildMatrix SAM inputs changed from repeat to plain params (#6670)

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  pavanvidem

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• raceid: linter fixes (#8035)

  bernt-matthias

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• quicktree: linter fixes (#8034)

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  bernt-matthias

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• Fix tools/drhip (#8023)

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  SaimMomin12

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Commits on May 26, 2026

• Add '.' as a valid character in celltypist.xml (#8025)

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  nilchia

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• Add new plugins for nanoplot and Sequali

  SaimMomin12

  committed
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• Updating tools/mgnify_pipelines_toolkit from version 1.5.0 to 1.5.1 (#8018)

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  gxydevbot

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  planemo-autoupdate

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• Updating tools/kma from version 1.6.10 to 1.6.11 (#8017)

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• Updating tools/minimap2 from version 2.30 to 2.31 (#8019)

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• Updating tools/ncbi_datasets from version 18.26.0 to 18.28.0 (#8020)

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Commits on May 23, 2026

• concoct use bai from metadata (#8007)

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  bernt-matthias

  authored
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• linter fixes to pureclip (#8012)

  bernt-matthias

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Commits on May 22, 2026

• Merge pull request #8010 from RZ9082/arriba

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Commits on May 21, 2026

• arriba - rm .lint_skip and fix warnings

  RZ9082

  committed
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• Update mapseq DM (#8000)

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  RZ9082

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Commits on May 19, 2026

• Restructure Openalex (#7989)

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  SaimMomin12

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Commits on May 18, 2026

• Updating tools/page_dewarp from version 0.2.7 to 0.3.4 (#7998)

  RZ9082

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• Update and fix failing tests for tools/multiqc (#7997)

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  SaimMomin12

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  planemo-autoupdate

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• Updating tools/fastq_dl from version 3.0.1 to 4.0.1 (#7996)

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  RZ9082

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  planemo-autoupdate

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• Updating tools/psauron from version 1.1.0 to 1.1.3 (#7994)

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• Updating tools/selenzy_wrapper from version 0.3.0 to 0.3.1 (#7995)

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Commits on May 17, 2026

• Adjust fields in ncbi-datasets to match current NCBI terms (#7988)

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  jennaj

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Commits on May 13, 2026

• Merge pull request #7984 from RZ9082/metamdbg

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  bgruening

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• planemo format metamdbg_asm.xml and metamdbg.xml

  RZ9082

  committed
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• update test files

  RZ9082

  committed
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Commits on May 12, 2026

• Merge pull request #7728 from bernt-matthias/ncbi_entrez_eutils-bump

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  bgruening

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• Update metamdbg to 1.4 and add new parameters

  RZ9082

  committed
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Commits on May 11, 2026

• update Openalex (#7970)

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