Commits

Branch selector

 master

User selector

All users

All time

Commit History

Commits on May 26, 2026

• Adjust Python compatibility

  bgyori

  committed
  82ab170

  Copy full SHA for 82ab170

• Install PySB from github

  bgyori

  committed
  70dba5b

  Copy full SHA for 70dba5b

Commits on Apr 17, 2026

• Temporarily migrate to deprecated PMC FTP

  bgyori

  committed
  8a3739f

  Copy full SHA for 8a3739f

• Add some caching to Minerva client

  bgyori

  committed
  f037ec1

  Copy full SHA for f037ec1

• Change some info to debug

  bgyori

  committed
  9877cc5

  Copy full SHA for 9877cc5

Commits on Mar 30, 2026

• Merge pull request #1495 from kkaris/threadlocal-fix

  Show description for cf60c50
  kkaris

  authored
  cf60c50

  Copy full SHA for cf60c50

Commits on Mar 26, 2026

• Set cursor as a property to ensure connection is truly thread local

  kkaris

  committed
  5bf74ad

  Copy full SHA for 5bf74ad

Commits on Mar 24, 2026

• Merge pull request #1493 from gyorilab/threadsafe-sqlite-ontology

  Show description for c0dfc2b
  bgyori

  authored
  c0dfc2b

  Copy full SHA for c0dfc2b

• Replace hasattr with None check

  bgyori

  committed
  298f2fa

  Copy full SHA for 298f2fa

• Simplify cursor access

  bgyori

  committed
  ab58cd3

  Copy full SHA for ab58cd3

Commits on Mar 17, 2026

• Make SqliteOntology thread safe

  kkaris

  committed
  ab2a2a4

  Copy full SHA for ab2a2a4

Commits on Jan 29, 2026

• Merge pull request #1489 from haohangyan/signor_processor

  Show description for 1f094a4
  bgyori

  authored
  1f094a4

  Copy full SHA for 1f094a4

• Add newline

  bgyori

  committed
  20feca8

  Copy full SHA for 20feca8

Commits on Jan 28, 2026

• Fixed signor processor for new release

  haohangyan

  committed
  ea75c34

  Copy full SHA for ea75c34

Commits on Dec 19, 2025

• Merge pull request #1487 from prasham21/add-new-source

  Show description for bd24641
  bgyori

  authored
  bd24641

  Copy full SHA for bd24641

Commits on Dec 18, 2025

• Only install texttoknowledgegraph on 3.9+

  bgyori

  committed
  b204daa

  Copy full SHA for b204daa

• Remove ndex2 version constraint

  bgyori

  committed
  2046065

  Copy full SHA for 2046065

• Add extra dependencies for tkg

  bgyori

  committed
  27a9267

  Copy full SHA for 27a9267

• Add to README

  bgyori

  committed
  497dfe2

  Copy full SHA for 497dfe2

• Clean up useless tests

  bgyori

  committed
  a6b9306

  Copy full SHA for a6b9306

• Simplify processor and normalization

  bgyori

  committed
  b1ca3c0

  Copy full SHA for b1ca3c0

• Avoid MeSH web service call

  bgyori

  committed
  7e8b49e

  Copy full SHA for 7e8b49e

Commits on Dec 17, 2025

• Fix TKG integration

  bgyori

  committed
  84c32a3

  Copy full SHA for 84c32a3

• Fix import and get API key from config/env

  bgyori

  committed
  76f8a00

  Copy full SHA for 76f8a00

• Fix offline test

  bgyori

  committed
  341d484

  Copy full SHA for 341d484

• Rename processor to match module name

  bgyori

  committed
  3734aa4

  Copy full SHA for 3734aa4

• Rename module to TKG to fit actual tool name

  bgyori

  committed
  50c7d9a

  Copy full SHA for 50c7d9a

Commits on Dec 16, 2025

• Remove more unnecessary code

  bgyori

  committed
  a2a2c7e

  Copy full SHA for a2a2c7e

• Begin reimplementing processor and API

  bgyori

  committed
  e4ea8ca

  Copy full SHA for e4ea8ca

• Include llm_bel package to ensure installation of new LLM-BEL reader source

  

  Prasham Marfatia

  committed
  314218e

  Copy full SHA for 314218e

• Register llm_bel in statement presentation ordering for HTML output

  

  Prasham Marfatia

  committed
  ff59ead

  Copy full SHA for ff59ead

• Register LLM-BEL as a new reader source with styling metadata

  

  Prasham Marfatia

  committed
  0ccba06

  Copy full SHA for 0ccba06

• Add prior belief probabilities for new LLM-BEL source

  

  Prasham Marfatia

  committed
  c8610c7

  Copy full SHA for c8610c7

• Add Sphinx documentation for new LLM-BEL source, API, processor, and normalizer

  

  Prasham Marfatia

  committed
  ebd8984

  Copy full SHA for ebd8984

• Add unified offline (V1) and mock live (V2) tests for LLM-BEL ingestion and delete the other two test files

  

  Prasham Marfatia

  committed
  cb8df5f

  Copy full SHA for cb8df5f