Dear Team,
Thank you for making the Gpcrdb! Recently, I downloaded a few A2AR homology model structures and find that disulphide bridge in the region 141-166 is broken and the refined structure are also deformed. Here are a list of A2AR structures with this property
- ClassA_aa2ar_human_5G53_refined_Active_2022-03-27_GPCRDB.pdb
- ClassA_aa2ar_human-gnas2_human_6GDG_refined_2022-03-28_GPCRdb.pdb
- ClassA_aa2ar_human_3UZC_refined_Inactive_2022-03-27_GPCRDB.pdb
- ClassA_aa2ar_human_3UZA_refined_Inactive_2022-03-27_GPCRDB.pdb
All of them have a missing segment inserted. Is there a quick fix in the backend minimizer on this issue (e.g. assigning a constraint using pdb's remark on disulphide bridge)?
Thanks.
Best,
Jordy
Dear Team,
Thank you for making the Gpcrdb! Recently, I downloaded a few A2AR homology model structures and find that disulphide bridge in the region 141-166 is broken and the refined structure are also deformed. Here are a list of A2AR structures with this property
All of them have a missing segment inserted. Is there a quick fix in the backend minimizer on this issue (e.g. assigning a constraint using pdb's remark on disulphide bridge)?
Thanks.
Best,
Jordy