bio
Official repository for the Boltz biomolecular interaction models
AlphaFold 3 inference pipeline.
Work with bioinformatic files using Arrow, Polars, and/or DuckDB
Proteomics search & quantification so fast that it feels like magic
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Single-cell analysis in Python. Scales to >100M cells.
Making Protein folding accessible to all!
MMseqs2: ultra fast and sensitive search and clustering suite
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
A collection of research papers for AI-based protein design
The Biorefinery Simulation and Techno-Economic Analysis Modules
Bio Reactor Design (BiRD): a toolbox to simulate and analyze different designs of bioreactors in OpenFOAM
Lists of bioreactor-related useful information.
Open PhotoBioReactor is an platform for Resarch, Education and Small companies who want to implement a Low Cost PBR
An environmental monitoring and regulation system
Core Interface and Engine for Vivarium 1.0
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
python module to plot beautiful and highly customizable genome browser tracks
LexicMap: efficient sequence alignment against millions of prokaryotic genomes