depiction of read distribution for outlier genes

Materials used during #NGSchool2017

TransAtlasDB: an informatics system for transcriptome analysis data

A summer workshop on single-cell (gen)omics and data analysis

Blog summarizing most important codes I have written

Platform for Interactive analysis and Visualization Of Transcriptomics data

Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."

A series of analyses related to refine.bio species compendia

Oxidative stress response of Candida glabrata.

A comprehensive analysis tool for Ribo-seq and small RNA-seq data

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

The TRN inference and regulon enrichment analysis was done with RTN v. 2.10.1 (Fletcher, Castro et al. 2013) and topGO v. 2.38.1 (Alexa and Rahnenfuhrer 2010). The code is fully available as a R notebook.

Differential gene expression data from the human central nervous system across Alzheimer’s disease, Lewy body diseases, and ALS-FTD.

Data analysis and integration of several transcriptomics studies to uncover genes and co-expression networks associated with the ageing process.

Deep-neural protein translation

Review on 'Reconciling Multiple Connectivity Scores for Drug Repurposing.'

Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining

Joint UMAP embedding and clustering of proteomic and transcriptomic data

Re-analysis of RNA seq data from Andrade et al