Hierarchical, iterative clustering for analysis of transcriptomics data in R

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

Materials used during #NGSchool2017

Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

An R package to plot interactive three-way differential expression analysis

The blog of tidyomics

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

ImaGene: A multi-omic ML/AI software with guided operational reports and supporting files

A comprehensive analysis tool for Ribo-seq and small RNA-seq data

Deep-neural protein translation

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

Single cell RNA-seq analysis for transcriptomic type characterization

Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."

feseR: Combining feature selection methods for analyzing omics data

Differential gene expression data from the human central nervous system across Alzheimer’s disease, Lewy body diseases, and ALS-FTD.

Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

scBubbletree: quantitative tool for visual exploration of scRNA-seq data

Review on 'Reconciling Multiple Connectivity Scores for Drug Repurposing.'

OmicsSuite website for releasing new version.