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Commits on Jun 25, 2026

• Release v0.5.1

  AroneyS

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• add changelog

  AroneyS

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• Release v0.5.0

  AroneyS

  committed
  ac87f8c

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• fix clippy

  AroneyS

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  f8c16db

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• move process to first in list

  AroneyS

  committed
  715dae0

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• improve docs

  AroneyS

  committed
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Commits on Jun 20, 2026

• Low memory mode (#68)

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  AroneyS

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Commits on Jun 17, 2026

• update release script to use cargo-dist

  AroneyS

  committed
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• update docs readme

  AroneyS

  committed
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• fix docs deployment

  AroneyS

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Commits on Jun 16, 2026

• Strip whitespace from input genome paths and contig names (#67)

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  3 peopleauthored
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• Add MIMAG quality analysis (#63)

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  AroneyS

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Commits on Aug 25, 2025

• Remove dashing preclusterer (#61)

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  wwood

  and

  AroneyS

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  73d6c06

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• Merge pull request #60 from wwood/larger-scale-dereplication

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  AroneyS

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Commits on Aug 24, 2025

• add more details to the docs

  AroneyS

  committed
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Commits on Aug 20, 2025

• parallelise preclustering

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  AroneyS

  committed
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Commits on Aug 17, 2025

• bump skani to v0.3.0

  AroneyS

  committed
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Commits on Aug 14, 2025

• remove genomes from reference_genomes that fail quality filtering

  AroneyS

  committed
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Commits on Aug 13, 2025

• ensure skani search stderr is consumed

  AroneyS

  committed
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Commits on Aug 7, 2025

• ensure skani sketch process stdout/stderr are consumed

  AroneyS

  committed
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Commits on Jul 30, 2025

• change skani reference clustering to use sketch/search rather than dist

  AroneyS

  committed
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Commits on Jul 29, 2025

• run all genome to reference comparisons in one skani command

  AroneyS

  committed
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Commits on Jul 28, 2025

• remove repetitive log

  AroneyS

  committed
  b4f635e

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• add help example

  AroneyS

  committed
  a5dec7a

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• minor fixes

  AroneyS

  committed
  eda9d7a

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• choose best quality genomes across both input genomes and references

  AroneyS

  committed
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Commits on Jul 25, 2025

• switch to better solution with distances_with_references preclusterer function

  AroneyS

  committed
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Commits on Jul 24, 2025

• initial solution with separate reference preclusterer

  AroneyS

  committed
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• Merge pull request #59 from wwood/fix-rep-bug

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  AroneyS

  authored
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• fix test properly

  AroneyS

  committed
  76226ae

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• fix test

  AroneyS

  committed
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• rename dashing and fastani to preclusterer and clusterer

  AroneyS

  committed
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Commits on Jul 23, 2025

• fix rep bug when transitive property not satisfied

  AroneyS

  committed
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Commits on Jul 22, 2025

• fix another reference

  

  AroneyS

  authored and

  wwood

  committed
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• fix explicit reference to "cluster-contigs"

  

  AroneyS

  authored and

  wwood

  committed
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