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BIOSTEC BIOINFORMATICS 2011: Rome, Italy
- Marco Pellegrini, Ana L. N. Fred, Joaquim Filipe, Hugo Gamboa:
BIOINFORMATICS 2011 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Rome, Italy, 26-29 January, 2011. SciTePress 2011, ISBN 978-989-8425-36-2
Full Papers
- Monther Alhamdoosh, Castrense Savojardo, Piero Fariselli, Rita Casadio:
Disulfide Connectivity Prediction with Extreme Learning Machines. BIOINFORMATICS 2011: 5-14 - Virginio Cantoni, Riccardo Gatti, Luca Lombardi:
Morphological Analysis of 3D Proteins Structure. BIOINFORMATICS 2011: 15-21 - Jan Schier, Bohumil Kovár:
Automated Counting of Yeast Colonies using the Fast Radial Transform Algorithm. BIOINFORMATICS 2011: 22-27 - Esa Pitkänen, Juho Rousu, Mikko Arvas:
Minimum Mutation Algorithm for Gapless Metabolic Network Evolution. BIOINFORMATICS 2011: 28-38 - Luna Dimitrio, Roberto Natalini, Luciano Milanesi:
A Mathematical Model for the Enhanced Cytoplasmic Transport - How to Get (Faster) to the Nucleus. BIOINFORMATICS 2011: 39-46 - Gabriel Synnaeve, Katsumi Inoue, Andrei Doncescu, Hidetomo Nabeshima, Yoshitaka Kameya, Masakazu Ishihata, Taisuke Sato:
Kinetic Models and Qualitative Abstraction for Relational Learning in Systems Biology. BIOINFORMATICS 2011: 47-54 - Guido Dell'Acqua, Alberto Maria Bersani:
Bistability and the Complex Depletion Paradox in the Double Phosphorylation-dephosphorylation Cycle. BIOINFORMATICS 2011: 55-65 - Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Enrico Macii:
A New Latent Semantic Analysis based Methodology for Knowledge Extraction from Biomedical Literature and Biological Pathways Databases. BIOINFORMATICS 2011: 66-74 - Na'el Abu-Halaweh, Amit Sabnis, Robert W. Harrison:
Prediction of Regulatory sRNAs in Prokaryotes using Machine Learning Tools. BIOINFORMATICS 2011: 75-81 - Kalle Karhu, Juho Mäkinen, Jussi Rautio, Jorma Tarhio, Hugh Salamon:
GAST, a Genomic Alignment Search Tool. BIOINFORMATICS 2011: 82-90
Short Papers
- Majid Masso, Iosif I. Vaisman:
Modeling Cell Proliferation Activity of Human Interleukin-3 upon Single Residue Replacements. BIOINFORMATICS 2011: 93-101 - Michaël Vyverman, Joachim M. De Schrijver, Wim Van Criekinge, Peter Dawyndt, Veerle Fack:
Accurate Long Read Mapping using Enhanced Suffix Arrays. BIOINFORMATICS 2011: 102-107 - Hunter N. B. Moseley, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane:
Metabolic Modeling of Converging Metabolic Pathways - Analysis of Non-steady State Stable Isotope-resolve Metabolism of UDP-GlcNAc and UDP-GalNAc. BIOINFORMATICS 2011: 108-115 - Mario Salerno, Gianluca Susi, Alessandro Cristini:
Accurate Latency Characterization for Very Large Asynchronous Spiking Neural Networks. BIOINFORMATICS 2011: 116-124 - Jyh-Jong Tsay, Bo-Liang Wu, Hou-Ji Dai:
BioDBLink: Multi-level Data Matching for Automatic Generation of Cross Links among Biochemical Pathway Databases. BIOINFORMATICS 2011: 125-130 - Giulia Menconi, Giovanni Battaglia, Roberto Grossi, Nadia Pisanti, Roberto Marangoni:
Inferring Mobile Elements in S. Cerevisiae Strains. BIOINFORMATICS 2011: 131-136 - Maria José Villanueva, Francisco Valverde, Oscar Pastor:
Applying Conceptual Modeling to Alignment Tools One Step towards the Automation of DNA Sequence Analysis. BIOINFORMATICS 2011: 137-142 - Leonor Rib, Ricard Gavaldà, José Manuel Soria, Alfonso Buil:
SalaboMiner - A Biomedical Literature Mining Tool for Inferring the Genetics of Complex Diseases. BIOINFORMATICS 2011: 143-148 - Anna Gambin, Slawomir Lasota, Michal Startek, Maciej Sykulski, Laurent Noé, Gregory Kucherov:
Subset Seed Extension to Protein BLAST. BIOINFORMATICS 2011: 149-158 - Lyamine Hedjazi, Marie-Véronique Le Lann, Tatiana Kempowsky-Hamon, Florence Dalenc, Gilles Favre:
Improved Breast Cancer Prognosis based on a Hybrid Marker Selection Approach. BIOINFORMATICS 2011: 159-164 - Manuel de la Sen, Santiago Alonso-Quesada, Asier Ibeas:
On Vaccination Controls for the SEIR Epidemic Model with Susceptible plus Immune Populations Tracking the Whole Population. BIOINFORMATICS 2011: 165-172 - Tomasz Gambin, Pawel Stankiewicz, Maciej Sykulski, Anna Gambin:
Robustness of Exon CGH Array Designs. BIOINFORMATICS 2011: 173-182 - Anna Marabotti, Corrado Cirielli, Daniela Agnese D'Arcangelo, Claudia Giampietri, Francesco Facchiano, Angelo M. Facchiano, Antonio Facchiano:
A Computational Strategy to Investigate Relevant Similarities between Virus and Human Proteins - Local High Similarities between Herpes and Human Proteins. BIOINFORMATICS 2011: 183-188 - Bráulio Roberto Gonçalves Marinho Couto, Marcelo Matos Santoro, Marcos Augusto dos Santos:
Singular Value Decomposition (SVD) and BLAST - Quite Different Methods Achieving Similar Results. BIOINFORMATICS 2011: 189-195 - Gaurav Thareja, Vivek Kumar, Mike Zyskowski, Simon Mercer, Bob Davidson:
PadeNA: A Parallel De Novo Assembler. BIOINFORMATICS 2011: 196-203 - Virginio Cantoni, Alessandro Gaggia, Riccardo Gatti, Luca Lombardi:
Geometrical Constraints for Ligand Positioning. BIOINFORMATICS 2011: 204-209 - Stefan Sokoll, Klaus D. Tönnies, Martin Heine:
Towards Fast 3D Nanoparticle Localization for Studying Molecular Dynamics in Living Cells. BIOINFORMATICS 2011: 210-215 - Matina Lakka, A. Desarti, Grigorios Chrysos, Euripides Sotiriades, Ioannis Papaefstathiou, Apostolos Dollas:
Reconfigurable Computing IP Cores for Multiple Sequence Alignment. BIOINFORMATICS 2011: 216-221 - Alexander Tsouknidas, Nikolaos Michailidis, Savvas Savvakis, Kleovoulos Anagnostidis, K.-D. Bouzakis, G. Kapetanos:
A High Accuracy CT based FEM Model of the Lumbar Spine to Determine its Biomechanical Response. BIOINFORMATICS 2011: 222-227 - Egon L. van den Broek, Theo E. Schouten:
Modeling Internal Radiation Therapy. BIOINFORMATICS 2011: 228-233 - Munib Ahmed, Ishfaq Ahmad, Samee Khan:
A Theoretical Analysis of Scalability of the Parallel Genome Assembly Algorithms. BIOINFORMATICS 2011: 234-237 - Petr Simecek, Maria Dzur-Gejdosova, Irena Chvatalova, Jirí Forejt:
Litter Effect in Mouse Phenotypic Studies. BIOINFORMATICS 2011: 238-243 - Corrado Giannantoni:
Bio-informatics in the Light of the Maximum Ordinality Principle - The Case of Duchenne Muscular Dystrophy. BIOINFORMATICS 2011: 244-250
Posters
- Daniel Cadete, António dos Anjos, Hamid Reza Shahbazkia, Richard Christen:
CUDA Performance in DNA Analysis - Analysis of Cuda Architecture Performance in DNA Analysis. BIOINFORMATICS 2011: 253-257 - Evgeny O. Puchkov:
Image Analysis Combined Fluorescence Microscopy - Examples of ImageJ Software Application in Yeast Studies. BIOINFORMATICS 2011: 258-261 - Lili Pei, Shujia Qin, Wei Ding, Lei Miao, Hongyi Li:
Chaos Level Investigation of Centre-of-pressure Single-step Displacement in Static and Dynamic Visual Conditions. BIOINFORMATICS 2011: 262-265 - Matthijs van der Kroon, Ignacio Lereu Ramirez, Ana M. Levin, Oscar Pastor, Sjaak Brinkkemper:
Mutational Data Loading Routines for Human Genome Databases - The BRCA1 Case. BIOINFORMATICS 2011: 266-269 - Rafal Wcislo:
Interactive Visualization Tool for Tumor Growth Simulations. BIOINFORMATICS 2011: 270-273 - Charalampos S. Kouzinopoulos, Panagiotis D. Michailidis, Konstantinos G. Margaritis:
Experimental Results on Multiple Pattern Matching Algorithms for Biological Sequences. BIOINFORMATICS 2011: 274-277 - Jaroslav Albert, Marianne Rooman:
Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise. BIOINFORMATICS 2011: 278-282 - Hang Zettervall, Elisabeth Rakus-Andersson, Henrik Forssell:
The Mamdani Controller in Prediction of the Survival Length in Elderly Gastric Patients. BIOINFORMATICS 2011: 283-286 - Badia Dandach-Bouaoudat, Farouk Yalaoui, Lionel Amodeo, Françoise Entzmann:
Optimization of a Solid State Fermentation based on Radial Basis Function Neural Network and Particle Swarm Optimization Algorithm. BIOINFORMATICS 2011: 287-292 - Alberto Calvi, Pietro Lovato, Simone Marchesini, Barbara Oliboni, Massimo Delledonne, Alberto Ferrarini:
Microarray System - A System for Managing Data Produced by DNA-microarray Experiments. BIOINFORMATICS 2011: 293-296 - José C. Calvo, Julio Ortega, Mancia Anguita, Javid Taheri, Albert Y. Zomaya:
A Method to Improve the Accuracy of Protein Torsion Angles. BIOINFORMATICS 2011: 297-300 - James T. Murphy, Ray Walshe, Marc Devocelle:
A Computational Modelling Approach to Explore the Anti-microbial Pro-drug Delivery System. BIOINFORMATICS 2011: 301-308 - András Hartmann, Susana Vinga, João Miranda Lemos:
Unified Modeling of Several Perturbation Experiments in Systems Biology - A Case Study on the Glucose Uptake of Lactococcus Lactis. BIOINFORMATICS 2011: 309-312 - Bráulio Roberto Gonçalves Marinho Couto, Marcelo Matos Santoro, Marcos Augusto dos Santos:
Unrevealing Biological Process with Linear Algebra - Extracting Patterns from Noisy Data. BIOINFORMATICS 2011: 313-317 - Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, M. A. Deriu, A. Grosso, Enrico Macii:
Binding Free Energy Calculation via Molecular Dynamics Simulations for a miRNA: mRNA Interaction. BIOINFORMATICS 2011: 318-321 - Juan Pablo Costa, Horacio Castellini, Patricia Risso, Bibiana Riquelme:
Texture Analysis of Milk Protein Gels using Digital Image Analysis. BIOINFORMATICS 2011: 322-325 - Sion L. Hannuna, Timo Kunkel, Nantheera Anantrasirichai, Nishan Canagarajah:
Colour Correction for Assessing Plant Pathology using Low Quality Cameras. BIOINFORMATICS 2011: 326-331
Special Session on Metagenomic Sequence Data Analysis
Full Papers
- Peter E. Larsen, Frank Collart, Folker Meyer, Jack A. Gilbert:
Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome. BIOINFORMATICS 2011: 337-345 - Victor V. Solovyev, Asaf A. Salamov, Igor A. Seledtsov, Denis Vorobyev, Alexander G. Bachinsky:
Automatic Annotation of Bacterial Community Sequences and Application to Infections Diagnostic. BIOINFORMATICS 2011: 346-353
Short Papers
- Tatiana A. Tatusova:
Infrastructure for Metagenome Data Management and Analysis. BIOINFORMATICS 2011: 357-362 - Folker Meyer, Nikos Kyrpides:
Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments. BIOINFORMATICS 2011: 363-366 - Samuel Patient, Maria Jesus Martin:
Annotating UniProt Metagenomic and Environmental Sequences in UniMES. BIOINFORMATICS 2011: 367-368
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