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PeerJ Computer Science, Volume 3
Volume 3, 2017
- Jennifer Lu, Florian P. Breitwieser, Peter Thielen
, Steven L. Salzberg
Bracken: estimating species abundance in metagenomics data. e104 - Aaron Meurer
SymPy: symbolic computing in Python. e103 - Anastasia Dimou
Challenges as enablers for high quality Linked Data: insights from the Semantic Publishing Challenge. e105
- Jamie P. McCusker
Finding melanoma drugs through a probabilistic knowledge graph. e106 - Konstantinos Konstantinidis, Symeon Papadopoulos, Yiannis Kompatsiaris:
Exploring Twitter communication dynamics with evolving community analysis. e107
- Benjamin Ultan Cowley
Computational testing for automated preprocessing: a Matlab toolbox to enable large scale electroencephalography data processing. e108 - Gregory Burlet, Abram Hindle:
Isolated guitar transcription using a deep belief network. e109
- Mark D. Wilkinson
Interoperability and FAIRness through a novel combination of Web technologies. e110 - Carlos J. Corrada-Bravo, Rafael Álvarez Berríos, T. Mitchell Aide:
Species-specific audio detection: a comparison of three template-based detection algorithms using random forests. e113
- Josh Terrell, Andrew Kofink, Justin Middleton, Clarissa Rainear, Emerson R. Murphy-Hill, Chris Parnin, Jon Stallings:
Gender differences and bias in open source: pull request acceptance of women versus men. e111 - Albert Krewinkel
Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar. e112 - Paul Fremantle, Philip J. Scott
A survey of secure middleware for the Internet of Things. e114 - Johannes M. Schleicher, Michael Vögler, Christian Inzinger, Schahram Dustdar
Modeling and management of usage-aware distributed datasets for global Smart City Application Ecosystems. e115 - Johannes Dröge
A probabilistic model to recover individual genomes from metagenomes. e117 - Markus J. Ankenbrand
AliTV - interactive visualization of whole genome comparisons. e116
- Andrew E. Webb, Thomas A. Walsh
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses. e118 - Angelo Antonio Salatino
How are topics born? Understanding the research dynamics preceding the emergence of new areas. e119 - Neil Swainston, Andrew Currin, Lucy Green
CodonGenie: optimised ambiguous codon design tools. e120
- Bahar Sateli, Felicitas Löffler
ScholarLens: extracting competences from research publications for the automatic generation of semantic user profiles. e121 - Jacob M. Schreiber, William S. Noble:
Finding the optimal Bayesian network given a constraint graph. e122 - Ken Arroyo Ohori, Hugo Ledoux, Jantien E. Stoter
Visualising higher-dimensional space-time and space-scale objects as projections to ℝ3. e123 - Evangelia I. Zacharaki:
Prediction of protein function using a deep convolutional neural network ensemble. e124 - Todd C. Pataky:
Power1D: a Python toolbox for numerical power estimates in experiments involving one-dimensional continua. e125 - Jaewoo Kim, Meeyoung Cha
Nowcasting commodity prices using social media. e126 - Rory Mitchell, Eibe Frank:
Accelerating the XGBoost algorithm using GPU computing. e127 - Igor Macedo Silva, Renan Cipriano Moioli
A method for creating interactive, user-resembling avatars. e128
- Bruno Contrino, Eric Miele, Ronald Tomlinson, M. Paola Castaldi, Piero Ricchiuto:
DOSCHEDA: a web application for interactive chemoproteomics data analysis. e129 - Pariya Kashfi, Agneta Nilsson, Robert Feldt:
Integrating User eXperience practices into software development processes: implications of the UX characteristics. e130
- Fabian Fagerholm
Guidelines for using empirical studies in software engineering education. e131
- Silvio Peroni
Research Articles in Simplified HTML: a Web-first format for HTML-based scholarly articles. e132 - Jianing Xi
DGPathinter: a novel model for identifying driver genes via knowledge-driven matrix factorization with prior knowledge from interactome and pathways. e133 - Yu Wu, Na Wang, Jessica Kropczynski
The appropriation of GitHub for curation. e134 - Jasmin Ramadani
Are suggestions from coupled file changes useful for perfective maintenance tasks? e135 - Dimitris Mitropoulos, Diomidis Spinellis
Fatal injection: a survey of modern code injection attack countermeasures. e136
- Mona Alshahrani
DANNP: an efficient artificial neural network pruning tool. e137 - Sándor Szénási:
Solving the inverse heat conduction problem using NVLink capable Power architecture. e138 - Maxime Leblanc-Latour, Craig Bryan, Andrew E. Pelling:
Utilizing social media and video games to control #DIY microscopes. e139
- Rui Fan, Ke Xu, Jichang Zhao
A GPU-based solution for fast calculation of the betweenness centrality in large weighted networks. e140 - Christoph Hochreiner
Cost-efficient enactment of stream processing topologies. e141 - Nicolas P. Rougier
Sustainable computational science: the ReScience initiative. e142
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