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Briefings in Bioinformatics, Volume 20
Volume 20, Number 1, January 2019
- Chia-Wei Chen, Hsin-Chou Yang
:
OPATs: Omnibus P-value association tests. 1-14 - Gennady G. Fedonin
VirGenA: a reference-based assembler for variable viral genomes. 15-25 - Shan-Shan Dong, Yan Guo, Shi Yao
Integrating regulatory features data for prediction of functional disease-associated SNPs. 26-32 - Ik-Soo Huh, Xin Wu, Taesung Park, Soojin V. Yi:
Detecting differential DNA methylation from sequencing of bisulfite converted DNA of diverse species. 33-46 - Ya Wang, Andrew E. Teschendorff, Martin Widschwendter
Accounting for differential variability in detecting differentially methylated regions. 47-57 - Jiazhen Ye, Lin Wang
AtCircDB: a tissue-specific database for Arabidopsis circular RNAs. 58-65 - Yongsheng Li
Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases. 66-76 - Adrian Baez-Ortega, Kevin Gori
Computational approaches for discovery of mutational signatures in cancer. 77-88 - Duanchen Sun, Xian-Wen Ren, Eszter Ari
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. 89-101 - Li Yao
Large-scale prediction of ADAR-mediated effective human A-to-I RNA editing. 102-109 - Cong Zeng, Lingyun Zou:
An account of in silico identification tools of secreted effector proteins in bacteria and future challenges. 110-129 - Ajanthah Sangaralingam, Abu Z. Dayem Ullah, Jacek Marzec, Emanuela Gadaleta, Ai Nagano
'Multi-omic' data analysis using O-miner. 130-143 - Hongwei Wang
Computational resources for ribosome profiling: from database to Web server and software. 144-155 - Xiaoming Wang, Carolyn Williams, Zhen Hua Liu, Joe Croghan:
Big data management challenges in health research - a literature review. 156-167 - Qian Yang
Pathway enrichment analysis approach based on topological structure and updated annotation of pathway. 168-177 - Xue Li, Xinlei Wang, Guanghua Xiao:
A comparative study of rank aggregation methods for partial and top ranked lists in genomic applications. 178-189 - Emir Muñoz
Facilitating prediction of adverse drug reactions by using knowledge graphs and multi-label learning models. 190-202 - Liang Cheng
MetSigDis: a manually curated resource for the metabolic signatures of diseases. 203-209 - Stijn Hawinkel, Federico Mattiello, Luc Bijnens, Olivier Thas:
A broken promise: microbiome differential abundance methods do not control the false discovery rate. 210-221 - Saira Afzal, Irene Gil-Farina
Systematic comparative study of computational methods for T-cell receptor sequencing data analysis. 222-234 - Somali Chaterji
Federation in genomics pipelines: techniques and challenges. 235-244 - Mohamad Saad, Ellen M. Wijsman:
Association score testing for rare variants and binary traits in family data with shared controls. 245-253 - Yulan Deng
Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability. 254-266 - Reuben J. Pengelly
Understanding the disease genome: gene essentiality and the interplay of selection, recombination and mutation. 267-273 - Shiping Yang, Hong Li
Critical assessment and performance improvement of plant-pathogen protein-protein interaction prediction methods. 274-287 - Daniel Spies
Comparative analysis of differential gene expression tools for RNA sequencing time course data. 288-298 - Elizabeth Sam, Prashanth Athri
Web-based drug repurposing tools: a survey. 299-316 - Yipeng Song
Principal component analysis of binary genomics data. 317-329 - Yumeng Liu, Xiaolong Wang
A comprehensive review and comparison of existing computational methods for intrinsically disordered protein and region prediction. 330-346 - Wilson Wen Bin Goh
Advanced bioinformatics methods for practical applications in proteomics. 347-355
- Cristina Marino Buslje
On the dynamical incompleteness of the Protein Data Bank. 356-359
Volume 20, Number 2, March 2019
- Vivienne Baillie Gerritsen, Patricia M. Palagi
Bioinformatics on a national scale: an example from Switzerland. 361-369 - Andreas Tauch, Arwa Al-Dilaimi:
Bioinformatics in Germany: toward a national-level infrastructure. 370-374 - Celia W. G. van Gelder
Bioinformatics in the Netherlands: the value of a nationwide community. 540-550 - Maria Victoria Schneider, Philippa C. Griffin, Sonika Tyagi
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. 384-389 - Javier De Las Rivas
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures. 390-397 - Teresa K. Attwood
A global perspective on evolving bioinformatics and data science training needs. 398-404 - Allegra Via, Teresa K. Attwood
A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning. 405-415 - Rochelle E. Tractenberg
Degrees of freedom analysis in educational research and decision-making: leveraging qualitative data to promote excellence in bioinformatics training and education. 416-425 - Guillaume Bernard
Alignment-free inference of hierarchical and reticulate phylogenomic relationships. 426-435 - Maria Angela Diroma
Elucidating the editome: bioinformatics approaches for RNA editing detection. 436-447 - Shiwei Ma, Qi Song
Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.). 448-456 - Nicholas P. Tatonetti:
Translational medicine in the Age of Big Data. 457-462 - Pablo Mier
Toward completion of the Earth's proteome: an update a decade later. 463-470 - Gabriela Alejandra Merino
A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies. 471-481 - Xiangyu Li
A rank-based algorithm of differential expression analysis for small cell line data with statistical control. 482-491 - Frauke Degenhardt
Evaluation of variable selection methods for random forests and omics data sets. 492-503 - Emmanuel S. Adabor, George K. Acquaah-Mensah:
Machine learning approaches to decipher hormone and HER2 receptor status phenotypes in breast cancer. 504-514 - Xing Chen
MicroRNAs and complex diseases: from experimental results to computational models. 515-539
- Maxwell Lewis Neal
Harmonizing semantic annotations for computational models in biology. 540-550 - Ivan V. Antonov
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools. 551-564 - Armin Scheben
Progress in single-access information systems for wheat and rice crop improvement. 565-571 - Lan Zhao
Molecular subtyping of cancer: current status and moving toward clinical applications. 572-584 - Hao Feng
Disease prediction by cell-free DNA methylation. 585-597 - Meng Zhou
Analysis of long noncoding RNAs highlights region-specific altered expression patterns and diagnostic roles in Alzheimer's disease. 598-608 - Mansoor A. S. Saqi
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures. 609-623 - Mengyun Wu, Shuangge Ma:
Robust genetic interaction analysis. 624-637 - Jiangning Song
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. 638-658 - Marek Ostaszewski
Community-driven roadmap for integrated disease maps. 659-670 - Bettina M. Pucher, Oana A. Zeleznik, Gerhard G. Thallinger
Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data. 671-681 - Tatianne da Costa Negri
Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants. 682-689 - Emile R. Chimusa
Post genome-wide association analysis: dissecting computational pathway/network-based approaches. 690-700 - L. Cristobal Monraz Gomez
Application of Atlas of Cancer Signalling Network in preclinical studies. 701-716
- Farnaz Barneh, Mehdi Mirzaie
Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer. 717-731
- Feng Gao
Recent developments of software and database in microbial genomics and functional genomics. 732-734 - Maria Victoria Schneider:
Bioinformatics: scalability, capabilities and training in the data-driven era. 735-736
Volume 20, Number 3, May 2019
- Jing Feng, Yu Xiang, Siyu Xia
CircView: a visualization and exploration tool for circular RNAs. 745-751 - Gonzalo Gómez-López
Precision medicine needs pioneering clinical bioinformaticians. 752-766 - Girolamo Giudice
Proteomics and phosphoproteomics in precision medicine: applications and challenges. 767-777 - Jochen Singer, Anja Irmisch, Hans-Joachim Ruscheweyh, Franziska Singer
Bioinformatics for precision oncology. 778-788 - Francesca Vitali
Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes. 789-805 - Anastasis Oulas
Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches. 806-824 - Nikolas Dovrolis
Computational profiling of the gut-brain axis: microflora dysbiosis insights to neurological disorders. 825-841 - Jessica D. Tenenbaum
Translational bioinformatics in mental health: open access data sources and computational biomarker discovery. 842-856 - Cedric Christian Laczny
Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates. 857-865 - Vasanthan Jayakumar
Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data. 866-876 - Fei Liu
Coloured Petri nets for multilevel, multiscale and multidimensional modelling of biological systems. 877-886 - Md Momin Al Aziz
Privacy-preserving techniques of genomic data - a survey. 887-895 - Xing Chen
RNA methylation and diseases: experimental results, databases, Web servers and computational models. 896-917 - Michele Bortolomeazzi
A survey of software tools for microRNA discovery and characterization using RNA-seq. 918-930 - Jiawei Wang
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. 931-951 - Yuxin Lin
Computer-aided biomarker discovery for precision medicine: data resources, models and applications. 952-975 - Yun-Ru Chen, Hsuan-Cheng Huang, Chen-Ching Lin:
Regulatory feedback loops bridge the human gene regulatory network and regulate carcinogenesis. 976-984 - Leili Shahriyari
Effect of normalization methods on the performance of supervised learning algorithms applied to HTSeq-FPKM-UQ data sets: 7SK RNA expression as a predictor of survival in patients with colon adenocarcinoma. 985-994 - Boyang Li, Qiongshi Lu
An evaluation of noncoding genome annotation tools through enrichment analysis of 15 genome-wide association studies. 995-1003 - Ágnes Osz, Lorinc Sándor Pongor, Danuta Szirmai, Balazs Györffy
A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years. 1004-1010 - Tobias Fehlmann, Shashwat Sahay
A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites. 1011-1020 - Hairong Wei
Construction of a hierarchical gene regulatory network centered around a transcription factor. 1021-1031 - Aitor Blanco-Míguez
Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. 1032-1056 - Massimiliano Zanin, Ivan Chorbev, Blaz Stres
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine. 1057-1062
Volume 20, Number 4, July 2019
- Michael Y. Galperin
Microbial genome analysis: the COG approach. 1063-1070 - Claudine Médigue, Alexandra Calteau
MicroScope - an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. 1071-1084 - Peter D. Karp, Richard Billington, Ron Caspi
The BioCyc collection of microbial genomes and metabolic pathways. 1085-1093 - Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, John Santerre, Maulik Shukla
PATRIC as a unique resource for studying antimicrobial resistance. 1094-1102 - Kai Blin
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters. 1103-1113 - Hao Luo
Recent development of Ori-Finder system and DoriC database for microbial replication origins. 1114-1124 - Florian P. Breitwieser
A review of methods and databases for metagenomic classification and assembly. 1125-1136 - Nathan D. Olson
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes. 1140-1150 - Folker Meyer, Saurabh Bagchi, Somali Chaterji
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. 1151-1159 - Kazutaka Katoh
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. 1160-1166 - David R. Gilbert, Monika Heiner
Towards dynamic genome-scale models. 1167-1180 - Lionel Morgado, Frank Johannes
Computational tools for plant small RNA detection and categorization. 1181-1192 - Yongsheng Li
Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk. 1193-1204 - Jincheol Park, Shili Lin:
Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures. 1205-1214 - Gerhard Mayer
A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects. 1215-1221 - Brian B. Luczak, Benjamin T. James
A survey and evaluations of histogram-based statistics in alignment-free sequence comparison. 1222-1237 - Arnau Montagud
Conceptual and computational framework for logical modelling of biological networks deregulated in diseases. 1238-1249 - Jian Zhang
Comprehensive review and empirical analysis of hallmarks of DNA-, RNA- and protein-binding residues in protein chains. 1250-1268 - Giulia Tini
Multi-omics integration - a comparison of unsupervised clustering methodologies. 1269-1279 - Bin Liu:
BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches. 1280-1294 - Ruiping Wang, Yue Han, Zhangxiang Zhao, Fan Yang, Tingting Chen, Wenbin Zhou, Xianlong Wang, Lishuang Qi, Wenyuan Zhao, Zheng Guo, Yunyan Gu:
Link synthetic lethality to drug sensitivity of cancer cells. 1295-1307 - Yongjun Zhu
Drug knowledge bases and their applications in biomedical informatics research. 1308-1321 - Qin Tang, Qiong Zhang
SEGreg: a database for human specifically expressed genes and their regulations in cancer and normal tissue. 1322-1328 - Florencio Pazos
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology. 1329-1336 - Ali Ezzat
Computational prediction of drug-target interactions using chemogenomic approaches: an empirical survey. 1337-1357 - Fernando Carazo
Upstream analysis of alternative splicing: a review of computational approaches to predict context-dependent splicing factors. 1358-1375 - Paul Medvedev:
Modeling biological problems in computer science: a case study in genome assembly. 1376-1383 - Alessandra Dal Molin
How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectives. 1384-1394 - Andrés Zalguizuri, Gustavo Caetano-Anollés, Viviana Claudia Lepek:
Phylogenetic profiling, an untapped resource for the prediction of secreted proteins and its complementation with sequence-based classifiers in bacterial type III, IV and VI secretion systems. 1395-1402 - Junpeng Zhang
Inferring and analyzing module-specific lncRNA-mRNA causal regulatory networks in human cancer. 1403-1419 - Shasha Li, Shuaishuai Teng, Junquan Xu, Guannan Su, Yu Zhang, Jianqing Zhao, Suwei Zhang, Haiyan Wang, Wenyan Qin, Zhi John Lu, Yong Guo, Qianyong Zhu, Dong Wang
Microarray is an efficient tool for circRNA profiling. 1420-1433 - Igor F. Tsigelny:
Artificial intelligence in drug combination therapy. 1434-1448 - Juan Xie
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data. 1449-1464 - Ming Hao, Stephen H. Bryant, Yanli Wang:
Open-source chemogenomic data-driven algorithms for predicting drug-target interactions. 1465-1474
- Daniela Oliveira
Where to search top-K biomedical ontologies? 1477-1491 - Jue Yang, Hui Song
Comprehensive analysis of Helicobacter pylori infection-associated diseases based on miRNA-mRNA interaction network. 1492-1501 - Hua Sun
Distinct telomere length and molecular signatures in seminoma and non-seminoma of testicular germ cell tumor. 1502-1512 - António Cruz
Interactive and coordinated visualization approaches for biological data analysis. 1513-1523 - Zhuo Zhang, Hao Li, Shuai Jiang, Ruijiang Li
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data. 1524-1541 - Damla Senol Cali
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions. 1542-1559
- David Arndt
PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes. 1560-1567 - Huansheng Cao, Qin Ma, Xin Chen, Ying Xu:
DOOR: a prokaryotic operon database for genome analyses and functional inference. 1568-1577 - Paul Stothard, Jason R. Grant, Gary H. Van Domselaar:
Visualizing and comparing circular genomes using the CGView family of tools. 1576-1582 - Shun H. Yip, Pak Chung Sham, Junwen Wang
Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data. 1583-1589
- Gaoyang Li
Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes. 1590-1603
Volume 20, Number 5, September 2019
- Shaoping Shi
Proteomic analysis and prediction of amino acid variations that influence protein posttranslational modifications. 1597-1606 - Georgina Stegmayer
Predicting novel microRNA: a comprehensive comparison of machine learning approaches. 1607-1620 - Tingting Shao, Guangjuan Wang, Hong Chen
Survey of miRNA-miRNA cooperative regulation principles across cancer types. 1621-1638 - Elena Rojano
Regulatory variants: from detection to predicting impact. 1639-1654 - Alicia Amadoz
A comparison of mechanistic signaling pathway activity analysis methods. 1655-1668 - Yu Bao, Simone Marini
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. 1669-1684 - Claire Bertelli
Microbial genomic island discovery, visualization and analysis. 1685-1698 - Francesco Pappalardo
In silico clinical trials: concepts and early adoptions. 1699-1708 - Ephifania Geza
A comprehensive survey of models for dissecting local ancestry deconvolution in human genome. 1709-1724 - Zhongneng Xu
Physiological RNA dynamics in RNA-Seq analysis. 1725-1733 - Raziur Rahman, Saugato Rahman Dhruba
Evaluating the consistency of large-scale pharmacogenomic studies. 1734-1753 - Dinanath Sulakhe, Mark D'Souza, Sheng Wang
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. 1754-1768 - Mikhail G. Dozmorov
Disease classification: from phenotypic similarity to integrative genomics and beyond. 1769-1780 - Qi Chen
Versatile interactions and bioinformatics analysis of noncoding RNAs. 1781-1794 - Gaye Lightbody
Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application. 1795-1811 - Chunjie Jiang
Landscape of the long non-coding RNA transcriptome in human heart. 1812-1825 - Dongyang Liu
Function determinants of TET proteins: the arrangements of sequence motifs with specific codes. 1826-1835 - Liang Chen
Trends in the development of miRNA bioinformatics tools. 1836-1852 - Seowon Choi, Hyun-Woo Kim, Jin-Wu Nam
The small peptide world in long noncoding RNAs. 1853-1864 - Yongjing Liu, Liangyu Fu, Kerstin Kaufmann
A practical guide for DNase-seq data analysis: from data management to common applications. 1865-1877 - Ahmet Süreyya Rifaioglu
Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases. 1878-1912
- Yang-Jun Wen, Ya-Wen Zhang, Jin Zhang, Jian-Ying Feng, Jim M. Dunwell, Yuan-Ming Zhang:
An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2. 1913-1924 - Zhenyu Yue, Le Zhao, Na Cheng, Hua Yan, Junfeng Xia
dbCID: a manually curated resource for exploring the driver indels in human cancer. 1925-1933 - Zuqi Zuo, Yonghao Jin, Wen Zhang, Yichen Lu, Bin Li
ATAC-pipe: general analysis of genome-wide chromatin accessibility. 1934-1943
- Oliver Schmitt
Connectome verification: inter-rater and connection reliability of tract-tracing-based intrinsic hypothalamic connectivity. 1944-1955
- Corrigendum to: How trees allocate carbon for optimal growth: insight from a game-theoretic model. 1956
Volume 20, Number 6, November 2019
- Rajeev K. Azad, Vladimir Shulaev:
Metabolomics technology and bioinformatics for precision medicine. 1957-1971 - Juan Wang
A review of metrics measuring dissimilarity for rooted phylogenetic networks. 1972-1980 - Jeff Gauthier
A brief history of bioinformatics. 1981-1996 - Clare Horscroft
Sequencing era methods for identifying signatures of selection in the genome. 1997-2008 - Siyu Han, Yanchun Liang, Qin Ma
LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property. 2009-2027 - Dai Hai Nguyen
Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches. 2028-2043 - Adam McDermaid, Brandon Monier, Jing Zhao, Bingqiang Liu, Qin Ma
Interpretation of differential gene expression results of RNA-seq data: review and integration. 2044-2054 - Johannes Brägelmann
A comparative analysis of cell-type adjustment methods for epigenome-wide association studies based on simulated and real data sets. 2055-2065 - Chen Wang, Lukasz A. Kurgan
Review and comparative assessment of similarity-based methods for prediction of drug-protein interactions in the druggable human proteome. 2066-2087 - Xun Chen
Comprehensive comparative analysis of methods and software for identifying viral integrations. 2088-2097 - Wenliang Zhang
Computational resources associating diseases with genotypes, phenotypes and exposures. 2098-2115 - Kleber Padovani de Souza
Machine learning meets genome assembly. 2116-2129 - Fulong Yu
Breast cancer prognosis signature: linking risk stratification to disease subtypes. 2130-2140 - Hongyan Yin, Mengwei Li, Lin Xia, Chaozu He, Zhang Zhang
Computational determination of gene age and characterization of evolutionary dynamics in human. 2141-2149 - Fuyi Li
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. 2150-2166 - Misagh Naderi, Jeffrey Mitchell Lemoine, Rajiv Gandhi Govindaraj, Omar Kana, Wei Pan Feinstein, Michal Brylinski:
Binding site matching in rational drug design: algorithms and applications. 2167-2184 - Yanju Zhang, Ruopeng Xie
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. 2185-2199 - Fentaw Abegaz, Kridsadakorn Chaichoompu
Principals about principal components in statistical genetics. 2200-2216 - Zhiyu Hao, Li Jiang, Jin Gao, Jinhua Ye, Jingli Zhao, Shuling Li, Runqing Yang:
Quick approximation of threshold values for genome-wide association studies. 2217-2223 - Saurav Mallik
An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays. 2224-2235 - Wan-Yu Lin
Polygenic approaches to detect gene-environment interactions when external information is unavailable. 2236-2252 - Min Li
Control principles for complex biological networks. 2253-2266 - Zhen Chen
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. 2267-2290 - Yan Zhao
PCA-based GRS analysis enhances the effectiveness for genetic correlation detection. 2291-2298 - Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski
Protein-peptide docking using CABS-dock and contact information. 2299-2305 - Meng Zou, Rui Jin, Kin Fai Au:
Revealing tumor heterogeneity of breast cancer by utilizing the linkage between somatic and germline mutations. 2306-2315 - Taiyun Kim
Impact of similarity metrics on single-cell RNA-seq data clustering. 2316-2326 - Zhidong Tang, Xuecang Li, Jianmei Zhao, Fengcui Qian, Chenchen Feng, Yanyu Li, Jian Zhang, Yong Jiang
TRCirc: a resource for transcriptional regulation information of circRNAs. 2327-2333
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