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Thomas Lengauer
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- affiliation: University Hospital Cologne, Germany
- affiliation (former): Max-Planck-Institut for Informatics, Saarbrücken, Germany
- award (2003): Konrad Zuse Medal
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2020 – today
- 2023
- [i3]Giulia Di Teodoro, Martin Pirkl, Francesca Incardona, Ilaria Vicenti, Anders Sönnerborg, Rolf Kaiser, Laura Palagi, Maurizio Zazzi, Thomas Lengauer:
Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1. CoRR abs/2311.04846 (2023)
2010 – 2019
- 2018
- [j123]Matthias Döring
, Joachim Büch, Georg Friedrich, Alejandro Pironti, Prabhav Kalaghatgi, Elena Knops, Eva Heger, Martin Obermeier, Martin Däumer, Alexander Thielen, Rolf Kaiser, Thomas Lengauer
geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data. Nucleic Acids Res. 46(Webserver-Issue): W271-W277 (2018) - 2017
- [j122]Felipe Albrecht, Markus List
DeepBlueR: large-scale epigenomic analysis in R. Bioinform. 33(13): 2063-2064 (2017) - [j121]Bonnie Berger, Terry Gaasterland, Thomas Lengauer
ISCB's initial reaction to New England Journal of Medicine editorial on data sharing. Bioinform. 33(18): 2968 (2017) - [j120]Prabhav Kalaghatgi
Computing phylogenetic trees using topologically related minimum spanning trees. J. Graph Algorithms Appl. 21(6): 1003-1025 (2017) - [i2]Prabhav Kalaghatgi, Thomas Lengauer:
Selecting optimal minimum spanning trees that share a topological correspondence with phylogenetic trees. CoRR abs/1701.02844 (2017) - 2016
- [j119]Felipe Albrecht
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets. Nucleic Acids Res. 44(Webserver-Issue): W581-W586 (2016) - [j118]Bonnie Berger, Terry Gaasterland, Thomas Lengauer
ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing. PLoS Comput. Biol. 12(3) (2016) - 2015
- [j117]Peter Ebert
A general concept for consistent documentation of computational analyses. Database J. Biol. Databases Curation 2015 (2015) - [j116]Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer
Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus. Bioinform. 31(4): 616-617 (2015) - [j115]Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. PLoS Comput. Biol. 11(1) (2015) - [j114]Thomas Lengauer
How to Write a Presubmission Inquiry. PLoS Comput. Biol. 11(2) (2015) - 2014
- [j113]Anna Katharina Hildebrandt, Matthias Dietzen, Thomas Lengauer, Hans-Peter Lenhof, Ernst Althaus, Andreas Hildebrandt
Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem. 35(10): 765-771 (2014) - [j112]Mazen Ahmad, Olga V. Kalinina, Thomas Lengauer:
Entropy gain due to water release upon ligand binding. J. Cheminformatics 6(S-1): 35 (2014) - [j111]Matthias Dietzen, Elena Zotenko
Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 54(12): 3453 (2014) - [j110]Daniel Becker, Pavlo Lutsik
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives. Nucleic Acids Res. 42(Webserver-Issue): 501-507 (2014) - 2013
- [j109]Laura Tolosi, Jessica Theißen, Konstantin Halachev, Barbara Hero, Frank Berthold
A method for finding consensus breakpoints in the cancer genome from copy number data. Bioinform. 29(14): 1793-1800 (2013) - [j108]Katarzyna Bozek, Thomas Lengauer, Saleta Sierra, Rolf Kaiser, Francisco S. Domingues
Analysis of Physicochemical and Structural Properties Determining HIV-1 Coreceptor Usage. PLoS Comput. Biol. 9(3) (2013) - [j107]Thomas Lengauer, Ruth Nussinov:
New Methods Section in PLOS Computational Biology. PLoS Comput. Biol. 9(3) (2013) - [j106]Sven-Eric Schelhorn, Matthias Fischer, Laura Tolosi, Janine Altmüller
Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes. PLoS Comput. Biol. 9(10) (2013) - 2012
- [j105]Nico Pfeifer
Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data. Bioinform. 28(18): 589-595 (2012) - [j104]Burkhard Rost
Paving the future: finding suitable ISMB venues. Bioinform. 28(19): 2556-2559 (2012) - [j103]Matthias Dietzen, Elena Zotenko
On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 52(3): 844-856 (2012) - [c73]Jasmina Bogojeska, Daniel Stöckel, Maurizio Zazzi, Rolf Kaiser, Francesca Incardona, Michal Rosen-Zvi, Thomas Lengauer:
History-alignment models for bias-aware prediction of virological response to HIV combination therapy. AISTATS 2012: 118-126 - 2011
- [j102]Laura Tolosi, Thomas Lengauer:
Classification with correlated features: unreliability of feature ranking and solutions. Bioinform. 27(14): 1986-1994 (2011) - [j101]Martin Däumer, Rolf Kaiser, Rolf Klein, Thomas Lengauer, Bernhard Thiele, Alexander Thielen:
Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis. BMC Medical Informatics Decis. Mak. 11: 30 (2011) - [j100]Pavlo Lutsik
BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucleic Acids Res. 39(Web-Server-Issue): 551-556 (2011) - 2010
- [j99]André Altmann
Permutation importance: a corrected feature importance measure. Bioinform. 26(10): 1340-1347 (2010) - [j98]Jasmina Bogojeska
Dealing with sparse data in predicting outcomes of HIV combination therapies. Bioinform. 26(17): 2085-2092 (2010) - [j97]Andreas Schlicker
Improving disease gene prioritization using the semantic similarity of Gene Ontology terms. Bioinform. 26(18) (2010) - [j96]Kirsten Roomp, Iris Antes, Thomas Lengauer:
Predicting MHC class I epitopes in large datasets. BMC Bioinform. 11: 90 (2010) - [j95]Thomas Lengauer, André Altmann
Chasing the AIDS virus. Commun. ACM 53(3): 66-74 (2010) - [j94]Dorothea Emig, Nathan Salomonis, Jan Baumbach
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Res. 38(Web-Server-Issue): 755-762 (2010)
2000 – 2009
- 2009
- [j93]Hagen Blankenburg
DASMI: exchanging, annotating and assessing molecular interaction data. Bioinform. 25(10): 1321-1328 (2009) - [j92]Thomas Lengauer, André Altmann
Bioinformatische Unterstützung der Auswahl von HIV-Therapien. Inform. Spektrum 32(4): 320-331 (2009) - [c72]Juliane Perner, André Altmann, Thomas Lengauer:
Semi-Supervised Learning for Improving Prediction of HIV Drug Resistance. GCB 2009: 55-65 - 2008
- [j91]Christoph Bock
Computational epigenetics. Bioinform. 24(1): 1-10 (2008) - [j90]Yassen Assenov, Fidel Ramírez, Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht:
Computing topological parameters of biological networks. Bioinform. 24(2): 282-284 (2008) - [j89]Jasmina Bogojeska, Adrian Alexa, André Altmann
Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores. Bioinform. 24(20): 2391-2392 (2008) - [j88]Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht:
Integrating expression data with domain interaction networks. Bioinform. 24(21): 2546-2548 (2008) - [j87]Jasmina Bogojeska
Stability analysis of mixtures of mutagenetic trees. BMC Bioinform. 9 (2008) - [j86]Dorothea Emig, Melissa S. Cline, Karsten Klein, Anne Kunert, Petra Mutzel
Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks. J. Integr. Bioinform. 5(2) (2008) - [j85]Nils Weinhold, Oliver Sander, Francisco S. Domingues
Local Function Conservation in Sequence and Structure Space. PLoS Comput. Biol. 4(7) (2008) - [c71]Oliver Sander, Francisco S. Domingues, Hongbo Zhu, Thomas Lengauer, Ingolf Sommer:
Structural Descriptors of Protein-Protein Binding Sites. APBC 2008: 79-88 - [c70]Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht:
An integrative approach for predicting interactions of protein regions. ECCB 2008: 35-41 - [c69]Steffen Bickel, Jasmina Bogojeska
Multi-task learning for HIV therapy screening. ICML 2008: 56-63 - [c68]Michal Rosen-Zvi
Selecting anti-HIV therapies based on a variety of genomic and clinical factors. ISMB 2008: 399-406 - [i1]Andreas Schlicker, Fidel Ramírez, Jörg Rahnenführer, Carola Huthmacher, Alejandro Pironti, Francisco S. Domingues, Thomas Lengauer, Mario Albrecht:
Applications of semantic similarity measures. Ontologies and Text Mining for Life Sciences 2008 - 2007
- [j84]Andreas Schlicker
Functional evaluation of domain-domain interactions and human protein interaction networks. Bioinform. 23(7): 859-865 (2007) - [j83]Francisco S. Domingues
Conformational analysis of alternative protein structures. Bioinform. 23(23): 3131-3138 (2007) - [j82]Ingolf Sommer, Oliver Müller, Francisco S. Domingues
Moment invariants as shape recognition technique for comparing protein binding sites. Bioinform. 23(23): 3139-3146 (2007) - [j81]Oliver Sander, Tobias Sing, Ingolf Sommer, Andrew J. Low
Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage. PLoS Comput. Biol. 3(3) (2007) - [j80]Thomas Lengauer, B. J. Morrison McKay, Burkhard Rost
ISMB/ECCB 2007: The Premier Conference on Computational Biology. PLoS Comput. Biol. 3(5) (2007) - [j79]Christoph Bock
CpG Island Mapping by Epigenome Prediction. PLoS Comput. Biol. 3(6) (2007) - 2006
- [j78]Jochen Maydt, Thomas Lengauer:
Recco: recombination analysis using cost optimization. Bioinform. 22(9): 1064-1071 (2006) - [j77]Andrew E. Torda, Thomas Lengauer:
Editorial. Bioinform. 22(10): 1157 (2006) - [j76]Burkhard Heil, Jost Ludwig, Hella Lichtenberg-Fraté, Thomas Lengauer:
Computational recognition of potassium channel sequences. Bioinform. 22(13): 1562-1568 (2006) - [j75]Adrian Alexa, Jörg Rahnenführer
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinform. 22(13): 1600-1607 (2006) - [j74]Oliver Sander, Ingolf Sommer, Thomas Lengauer:
Local protein structure prediction using discriminative models. BMC Bioinform. 7: 14 (2006) - [j73]Hongbo Zhu, Francisco S. Domingues
NOXclass: prediction of protein-protein interaction types. BMC Bioinform. 7: 27 (2006) - [j72]Andreas Schlicker
A new measure for functional similarity of gene products based on Gene Ontology. BMC Bioinform. 7: 302 (2006) - [j71]Ingolf Sommer, Stefano Toppo
Improving the quality of protein structure models by selecting from alignment alternatives. BMC Bioinform. 7: 364 (2006) - [j70]Dirk Neumann
A Fully Computational Model for Predicting Percutaneous Drug Absorption. J. Chem. Inf. Model. 46(1): 424-429 (2006) - [j69]Andreas Kämper
Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies. J. Chem. Inf. Model. 46(2): 903-911 (2006) - [j68]Andreas Steffen, Andreas Kämper
Flexible Docking of Ligands into Synthetic Receptors Using a Two-Sided Incremental Construction Algorithm. J. Chem. Inf. Model. 46(4): 1695-1703 (2006) - [c67]Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann
Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS 2006: 185-194 - [c66]Andreas Schlicker, Carola Huthmacher, Fidel Ramírez, Thomas Lengauer, Mario Albrecht:
Functional Evaluation of Domain-Domain Interactions and Human Protein Interaction Networks. German Conference on Bioinformatics 2006: 115-126 - [c65]Iris Antes, Shirley W. I. Siu, Thomas Lengauer:
DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. ISMB (Supplement of Bioinformatics) 2006: 16-24 - 2005
- [j67]Niko Beerenwinkel, Jörg Rahnenführer
Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. 21(9): 2106-2107 (2005) - [j66]Jörg Rahnenführer
Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinform. 21(10): 2438-2446 (2005) - [j65]Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer:
ROCR: visualizing classifier performance in R. Bioinform. 21(20): 3940-3941 (2005) - [j64]Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer
Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. 21(21): 3943-3950 (2005) - [j63]Christoph Bock
BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinform. 21(21): 4067-4068 (2005) - [j62]Andreas Hahn, Jörg Rahnenführer
Confirmation of human protein interaction data by human expression data. BMC Bioinform. 6: 112 (2005) - [j61]Thomas Lengauer:
The DFG Priority Program "Informatics Methods for the Analysis and Interpretation of Large Genomic Datasets". it Inf. Technol. 47(4): 226-231 (2005) - [j60]Niko Beerenwinkel, Jörg Rahnenführer
Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. 12(6): 584-598 (2005) - [j59]Christian Merkwirth, Thomas Lengauer:
Automatic Generation of Complementary Descriptors with Molecular Graph Networks. J. Chem. Inf. Model. 45(5): 1159-1168 (2005) - [j58]Iris Antes, Christian Merkwirth, Thomas Lengauer:
POEM: Parameter Optimization Using Ensemble Methods: Application to Target Specific Scoring Functions. J. Chem. Inf. Model. 45(5): 1291-1302 (2005) - [c64]Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto
Decomposing protein networks into domain-domain interactions. ECCB/JBI 2005: 221 - [c63]Tobias Sing, Niko Beerenwinkel, Thomas Lengauer, Valentina Svicher, Francesca Ceccherini-Silberstein, Carlo-Federico Perno:
Supervised and Unsupervised Approaches for Analyzing Covariation and Phenotypic Impact of HIV Drug Resistance Mutations. LWA 2005: 234-239 - [c62]Tobias Sing, Valentina Svicher
Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. PKDD 2005: 285-296 - 2004
- [j57]Torsten Crass, Iris Antes, Rico Basekow, Peer Bork
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinform. 20(2): 268-270 (2004) - [j56]Ingolf Sommer, Jörg Rahnenführer
Predicting protein structure classes from function predictions. Bioinform. 20(5): 770-776 (2004) - [j55]Niklas von Öhsen, Ingolf Sommer, Ralf Zimmer
Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. Bioinform. 20(14): 2228-2235 (2004) - [j54]Christian Merkwirth, Harald Mauser, Tanja Schulz-Gasch, Olivier Roche, Martin Stahl, Thomas Lengauer:
Ensemble Methods for Classification in Cheminformatics. J. Chem. Inf. Model. 44(6): 1971-1978 (2004) - [c61]Niko Beerenwinkel, Jörg Rahnenführer
Learning multiple evolutionary pathways from cross-sectional data. RECOMB 2004: 36-44 - [c60]Tobias Sing, Niko Beerenwinkel, Thomas Lengauer:
Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve. ROCAI 2004: 89-96 - 2003
- [j53]Mario Albrecht, Thomas Lengauer:
Pyranose Oxidase Identified as A Member of the GMC Oxidoreductase Family. Bioinform. 19(10): 1216-1220 (2003) - [j52]Mario Albrecht, Thomas Lengauer, Stefan Schreiber:
Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. Bioinform. 19(17): 2171-2175 (2003) - [j51]Alexander Zien, Juliane Fluck
Microarrays: How Many Do You Need? J. Comput. Biol. 10(3/4): 653-667 (2003) - [j50]Marcus Peinado, Thomas Lengauer:
Parallel 'go with the winners' algorithms in distributed memory models. J. Parallel Distributed Comput. 63(9): 801-814 (2003) - [j49]Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res. 31(13): 3850-3855 (2003) - [c59]Thomas Lengauer:
Analyzing resistance phenomena in HIV with bioinformatics methods. ECCB 2003: 92 - [c58]Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig:
Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) 2003: 16-25 - 2002
- [j48]Ingolf Sommer, Alexander Zien, Niklas von Öhsen, Ralf Zimmer
Confidence measures for protein fold recognition. Bioinform. 18(6): 802-812 (2002) - [j47]Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
ProML - the Protein Markup Language for specification of protein sequences, structures and families. Silico Biol. 2(3): 313-324 (2002) - [j46]Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
Improving fold recognition of protein threading by experimental distance constraints. Silico Biol. 2(3): 325-337 (2002) - [j45]Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer:
A hypergraph-based method for unification of existing protein structure- and sequence-families. Silico Biol. 2(3): 339-349 (2002) - [j44]Sally A. Hindle, Matthias Rarey
Flexible docking under pharmacophore type constraints. J. Comput. Aided Mol. Des. 16(2): 129-149 (2002) - [j43]Thomas Lengauer:
Preface: Special RECOMB 2001 Issue. J. Comput. Biol. 9(2): 147-148 (2002) - [j42]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proc. Natl. Acad. Sci. USA 99(12): 8271-8276 (2002) - [c57]Thomas Lengauer:
Editorial. ECCB 2002: 1 - [c56]Thomas Lengauer:
ECCB 2002 Organization. ECCB 2002: 2-3 - [c55]Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer:
Co-clustering of biological networks and gene expression data. ISMB 2002: 145-154 - [c54]Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer:
Microarrays: how many do you need? RECOMB 2002: 321-330 - 2001
- [j41]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann
Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. IEEE Intell. Syst. 16(6): 35-41 (2001) - [c53]Thomas Lengauer:
Computational Biology at the Beginning of the Post-genomic Era. Informatics 2001: 341-355 - [c52]Ingolf Sommer, Niklas von Öhsen, Alexander Zien, Ralf Zimmer, Thomas Lengauer:
Confidence Measures for Fold Recognition. German Conference on Bioinformatics 2001: 26-33 - [c51]Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
ProML - the Protein Markup Language for specification of protein sequences, structures and families. German Conference on Bioinformatics 2001: 58-67 - [c50]Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
Improving Fold Recognition of Protein Threading by Experimental Distance Constraints. German Conference on Bioinformatics 2001: 68-77 - [c49]Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer:
A new Method for Unification of Existing Protein Structure- and Sequence-Families. German Conference on Bioinformatics 2001: 78-84 - [c48]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig:
Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics 2001: 126-130 - [c47]Alexander Zien, Thomas Aigner, Ralf Zimmer, Thomas Lengauer:
Centralization: a new method for the normalization of gene expression data. ISMB (Supplement of Bioinformatics) 2001: 323-331 - [e8]Thomas Lengauer:
Proceedings of the Fifth Annual International Conference on Computational Biology, RECOMB 2001, Montréal, Québec, Canada, April 22-25, 2001. ACM 2001, ISBN 1-58113-353-7 [contents] - 2000
- [j40]Thomas Lengauer, Ralf Zimmer
Protein Structure Prediction Methods for Drug Design. Briefings Bioinform. 1(3): 275-288 (2000) - [j39]Alexander Zien, Gunnar Rätsch
Engineering support vector machine kernels that recognize translation initiation sites. Bioinform. 16(9): 799-807 (2000) - [j38]Robert Küffner, Ralf Zimmer, Thomas Lengauer:
Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinform. 16(9): 825-836 (2000) - [j37]Christian Lemmen, Thomas Lengauer:
Computational methods for the structural alignment of molecules. J. Comput. Aided Mol. Des. 14(3): 215-232 (2000) - [j36]Alexander Zien, Ralf Zimmer
A Simple Iterative Approach to Parameter Optimization. J. Comput. Biol. 7(3-4): 483-501 (2000) - [j35]Thomas Lengauer, Martin Lügering:
Provably Good Global Routing of Integrated Circuits. SIAM J. Optim. 11(1): 1-30 (2000) - [c46]Thomas Lengauer:
Computational Biology - Algorithms and More. ESA 2000: 9-19 - [c45]Thomas Lengauer:
Bioinformatics Problems Along the Process Line from Genomic Data to New Drugs. German Conference on Bioinformatics 2000: 189 - [c44]Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer:
Analysis of Gene Expression Data with Pathway Scores. ISMB 2000: 407-417 - [c43]Alexander Zien, Ralf Zimmer, Thomas Lengauer:
A simple iterative approach to parameter optimization. RECOMB 2000: 318-327 - [e7]Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig:
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA. AAAI 2000, ISBN 1-57735-115-0 [contents]
1990 – 1999
- 1999
- [j34]Matthias Rarey
Docking of hydrophobic ligands with interaction-based matching algorithms. Bioinform. 15(3): 243-250 (1999) - [j33]Thomas Lengauer:
Editorial. The Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB'99). Bioinform. 15(10): 775 (1999) - [j32]Joachim Selbig, Heinz-Theodor Mevissen, Thomas Lengauer:
Decision tree-based formation of consensus protein secondary structure prediction. Bioinform. 15(12): 1039-1046 (1999) - [c42]Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Christian Lemmen, Alexander J. Smola, Thomas Lengauer, Klaus-Robert Müller:
Engineering Support Vector Machine Kerneis That Recognize Translation Initialion Sites. German Conference on Bioinformatics 1999: 37-43 - [c41]Robert Küffner, Ralf Zimmer, Thomas Lengauer:
Pathway analysis in metabolic databases via differetial metabolic display (DMD). German Conference on Bioinformatics 1999: 141-147 - [c40]Christian Lemmen, Alexander Zien, Ralf Zimmer, Thomas Lengauer:
Application of Parameter Optimization to Molecular Comparison Problems. Pacific Symposium on Biocomputing 1999: 482-493 - [c39]Thomas Lengauer:
Invited Lecture: Discrete Optimization Methods for Packing Problems in Two and Three Dimensions - With Applications in the Textile and Car Manufacturing Industries. WG 1999: 27-28 - [e6]Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas L. Brutlag, Janice I. Glasgow, Hans-Werner Mewes, Ralf Zimmer:
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany. AAAI 1999, ISBN 1-57735-083-9 [contents] - 1998
- [j31]Ralf Heckmann, Thomas Lengauer:
Computing closely matching upper and lower bounds on textile nesting problems. Eur. J. Oper. Res. 108(3): 473-489 (1998) - [j30]Christian Lemmen, Claus Hiller, Thomas Lengauer:
RigFit: A new approach to superimposing ligand molecules. J. Comput. Aided Mol. Des. 12(5): 491-502 (1998) - [c38]Matthias Rarey, Bernd Kramer, Thomas Lengauer:
Docking of hydrophobic ligands with interaction-based matching algorithms. German Conference on Bioinformatics 1998 - [c37]Marcus Peinado, Thomas Lengauer:
Random Generation of Embedded Graphs and an Extension to Dobrushin Uniqueness (Extended Abstract). STOC 1998: 176-185 - 1997
- [j29]Christian Lemmen, Thomas Lengauer:
Time-efficient flexible superposition of medium-sized molecules. J. Comput. Aided Mol. Des. 11(4): 357-368 (1997) - [j28]Matthias Rarey
Multiple automatic base selection: Protein-ligand docking based on incremental construction without manual intervention. J. Comput. Aided Mol. Des. 11(4): 369-384 (1997) - [c36]Christian Lemmen, Claus Hiller, Thomas Lengauer:
RigFit: a new approach to superimposing ligand molecules. German Conference on Bioinformatics 1997: 103-105 - [c35]Franz-Josef Brandenburg, Michael Jünger, Petra Mutzel, Thomas Lengauer:
Algorithmen zum automatischen Zeichnen von Graphen im Rahmen des DFG-Schwerpunkts Effiziente Algorithmen für diskrete Probleme und ihre Anwendungen. GI Jahrestagung 1997: 58-67 - [c34]Thomas Lengauer:
DFG-Schwerpunkt: Informatikmethoden zur Analyse und Interpretation großer genomischer Datenmengen. GI Jahrestagung 1997: 76-84 - [c33]Marcus Peinado, Thomas Lengauer:
Parallel 'Go with the Winners' Algorithms in the LogP Model. IPPS 1997: 656-664 - [c32]Ina Koch, Thomas Lengauer:
Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. ISMB 1997: 167-178 - [c31]Marcus Peinado, Thomas Lengauer:
'Go with the winners' Generators with Applications to Molecular Modeling. RANDOM 1997: 135-149 - [c30]Ralf Zimmer
Fast and numerically stable parametric alignment of biosequences. RECOMB 1997: 344-353 - [e5]Ralf Hofestädt, Thomas Lengauer, Markus Löffler, Dietmar Schomburg:
Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany, September 30 - October 2, 1996, Selected Papers. Lecture Notes in Computer Science 1278, Springer 1997, ISBN 3-540-63370-7 [contents] - 1996
- [j27]Ralf Hofestädt, Markus Löffler, Thomas Lengauer:
Editorial: Informatik in den Biowissenschaften. Informationstechnik Tech. Inform. 38(5): 5-7 (1996) - [j26]Matthias Rarey
Placement of medium-sized molecular fragments into active sites of proteins. J. Comput. Aided Mol. Des. 10(1): 41-54 (1996) - [j25]Ina Koch
An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. J. Comput. Biol. 3(2): 289-306 (1996) - [c29]Ralf Heckmann, Thomas Lengauer:
Computing Upper and Lower Bounds on Textile Nesting Problems. ESA 1996: 392-405 - [c28]Christian Lemmen, Thomas Lengauer:
Time-Efficient Flexible Superposition of Medium-Sized Molecules and Molecular Fragments. German Conference on Bioinformatics 1996: 257-259 - 1995
- [j24]Ralf Heckmann, Thomas Lengauer:
A simulated annealing approach to the nesting problem in the textile manufacturing industry. Ann. Oper. Res. 57(1): 103-133 (1995) - [j23]Jörg Heistermann, Thomas Lengauer:
The nesting problem in the leather manufacturing industry. Ann. Oper. Res. 57(1): 147-173 (1995) - [c27]H. Schmidt, Dirk Theune, Ralf Thiele, Thomas Lengauer:
EMC-driven midway routing on PCBs. ED&TC 1995: 486-491 - [c26]Elof Frank, Thomas Lengauer:
APPlaUSE: Area and performance optimization in a unified placement and synthesis environment. ICCAD 1995: 662-667 - [c25]Matthias Rarey, Bernd Kramer, Thomas Lengauer:
Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins. ISMB 1995: 300-308 - [c24]Ralf Thiele, Ralf Zimmer, Thomas Lengauer:
Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment. ISMB 1995: 384-392 - [e4]Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak:
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995. AAAI 1995, ISBN 0-929280-83-0 [contents] - 1994
- [j22]Dirk Theune, Ralf Thiele, Werner John, Thomas Lengauer:
Robust methods for EMC-driven routing. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 13(11): 1366-1378 (1994) - 1993
- [j21]Thomas Lengauer, Egon Wanke:
Efficient Decision Procedures for Graph Properties on Centext-Free Graph Languages. J. ACM 40(2): 368-393 (1993) - [j20]Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer:
1. Fachtagung "Informatik in den Biowissenschaften". Künstliche Intell. 7(3): 31 (1993) - [j19]Thomas Lengauer, Rolf Müller:
Robust and accurate hierarchical floorplanning with integrated global wiring. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 12(6): 802-809 (1993) - [c23]Thomas Lengauer:
Informatik in den technischen Disziplinen. Perspektiven der Informatik 1993: 13-16 - [c22]Thomas Lengauer:
Informatik in den Naturwissenschaften. Perspektiven der Informatik 1993: 16-20 - [c21]Thomas Lengauer:
Algorithmic Research Problems in Molecular Bioinformatics. ISTCS 1993: 177-192 - [c20]Jörg Heistermann, Thomas Lengauer:
Efficient Automatic Part Nesting on Irregular and Inhomogeneous Surfaces. SODA 1993: 251-259 - [p2]Thomas Lengauer, Martin Lügering:
Integer Program formulations of Global Routing and Placement Problems. Algorithmic Aspects of VLSI Layout 1993: 167-197 - [e3]Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer:
Informatik in den Biowissenschaften, 1. Fachtagung der GI-FG 4.0.3 "Informatik in den Biowissenschaften", Bonn, 15./16. Februar 1993, Proceedings. Informatik Aktuell, Springer 1993, ISBN 3-540-56456-X [contents] - [e2]Thomas Lengauer:
Algorithms - ESA '93, First Annual European Symposium, Bad Honnef, Germany, September 30 - October 2, 1993, Proceedings. Lecture Notes in Computer Science 726, Springer 1993, ISBN 3-540-57273-2 [contents] - 1992
- [j18]Thomas Lengauer, Klaus W. Wagner:
The Correlation between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems. J. Comput. Syst. Sci. 44(1): 63-93 (1992) - [c19]Franz Höfting, Thomas Lengauer, Egon Wanke:
Processing of Hierarchically Defined Graphs and Graph Families. Data Structures and Efficient Algorithms 1992: 44-69 - [c18]Dirk Theune, Ralf Thiele, Thomas Lengauer, Anja Feldmann
HERO: hierarchical EMC-constrained routing. ICCAD 1992: 468-472 - 1991
- [j17]Jörg Heistermann, Thomas Lengauer:
The efficient solution of integer programs for hierarchical global routing. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 10(6): 748-753 (1991) - [c17]Frank Buijs, Thomas Lengauer:
Synthesis of multi-level logic with one symbolic input. EURO-DAC 1991: 60-64 - [c16]Thomas Lengauer, Dirk Theune:
Efficient Algorithms for Path Problems with Gernal Cost Citeria. ICALP 1991: 314-326 - [c15]Thomas Lengauer, Dirk Theune:
Unstructured Path Problems and the Making of Semirings (Preliminary Version). WADS 1991: 189-200 - 1990
- [b2]Thomas Lengauer:
Combinatorial algorithms for integrated circuit layout. Applicable theory in computer science, Teubner 1990, ISBN 978-0-471-92838-6, pp. I-XXVIII, 1-697 - [j16]Thomas Lengauer, Klaus W. Wagner:
The Binary Network Flow Problem is Logspace Complete for P. Theor. Comput. Sci. 75(3): 357-363 (1990) - [c14]Thomas Lengauer, Rolf Müller:
A Robust Framework for Hierarchical Floorplanning with Integrated Global Wiring. ICCAD 1990: 148-151 - [p1]Thomas Lengauer:
VLSI Theory. Handbook of Theoretical Computer Science, Volume A: Algorithms and Complexity (A) 1990: 835-868 - [e1]Christian Choffrut, Thomas Lengauer:
STACS 90, 7th Annual Symposium on Theoretical Aspects of Computer Science, Rouen, France, February 22-24, 1990, Proceedings. Lecture Notes in Computer Science 415, Springer 1990, ISBN 3-540-52282-4 [contents]
1980 – 1989
- 1989
- [j15]Thomas Lengauer:
Hierarchical planarity testing algorithms. J. ACM 36(3): 474-509 (1989) - 1988
- [j14]Thomas Lengauer, Egon Wanke:
Efficient processing of hierarchical graphs for engineering design. Bull. EATCS 35: 143-157 (1988) - [j13]Thomas Lengauer, Rolf Müller:
Linear arrangement problems on recursively partitioned graphs. ZOR Methods Model. Oper. Res. 32(3-4): 213-230 (1988) - [j12]Thomas Lengauer, Egon Wanke:
Efficient Solution of Connectivity Problems on Hierarchically Defined Graphs. SIAM J. Comput. 17(6): 1063-1080 (1988) - [c13]Thomas Lengauer, Egon Wanke:
Efficient Analysis of Graph Properties on Context-free Graph Languages (Extended Abstract). ICALP 1988: 379-393 - 1987
- [j11]Thomas Lengauer, Christian Wieners:
Efficient solutions of hierarchical systems of linear equations. Computing 39(2): 111-132 (1987) - [j10]Thomas Lengauer:
Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs. J. Algorithms 8(2): 260-284 (1987) - [j9]Jürgen Doenhardt, Thomas Lengauer:
Algorithmic Aspects of One-Dimensional Layout Compaction. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 6(5): 863-878 (1987) - [c12]Thomas Lengauer, Klaus W. Wagner:
The Correlation Between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems. STACS 1987: 100-113 - 1986
- [j8]Thomas Lengauer, Stefan Näher:
An analysis of ternary simulation as a tool for race detection in digital MOS circuits. Integr. 4(4): 309-330 (1986) - [c11]Rolf Müller, Thomas Lengauer:
Linear Algorithms For Two CMOS Layout Problems. Aegean Workshop on Computing 1986: 121-132 - [c10]Thomas Lengauer:
Exploiting Hierarchy in VLSI Design. Aegean Workshop on Computing 1986: 180-193 - [c9]Thomas Lengauer:
Hierarchische Darstellung geometrischer Objekte und ihre algorithmische Bedeutung. GI Jahrestagung (1) 1986: 456-469 - [c8]Thomas Lengauer:
Hierarchical Planary Testing Algorithms. ICALP 1986: 215-225 - [c7]Thomas Lengauer:
Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs. STACS 1986: 153-170 - 1984
- [j7]Thomas Lengauer:
On the Solution of Inequality Systems Relevant to IC-Layout. J. Algorithms 5(3): 408-421 (1984) - [c6]Thomas Lengauer:
Algorithmische Spezifikation von symbolischen Layouts integrierter Schaltkreise. GI Jahrestagung (Fachgespräche) 1984: 5-16 - 1983
- [c5]Thomas Lengauer:
Efficient Algorithms for the Constraint Generation for Integrated Circuit Layout Compaction. WG 1983: 219-230 - 1982
- [j6]Thomas Lengauer:
Cube-Connected Cycles - Shuffle Exchange Graph - Das aktuelle Schlagwort. Inform. Spektrum 5(3): 192-194 (1982) - [j5]Thomas Lengauer, Robert Endre Tarjan:
Asymptotically tight bounds on time-space trade-offs in a pebble game. J. ACM 29(4): 1087-1130 (1982) - [c4]Thomas Lengauer:
The Complexity of Compacting Hierarchically Specified Layouts of Integrated Circuits (Preliminary Version). FOCS 1982: 358-368 - [c3]Thomas Lengauer:
On the Solution of Inequality Systems Relevant to IC-Layout. WG 1982: 151-164 - 1981
- [j4]Thomas Lengauer:
Black-White Pebbles and Graph Separation. Acta Informatica 16: 465-475 (1981) - 1980
- [j3]Thomas Lengauer, Robert Endre Tarjan:
The Space Complexity of Pebble Games on Trees. Inf. Process. Lett. 10(4/5): 184-188 (1980) - [j2]John R. Gilbert, Thomas Lengauer, Robert Endre Tarjan:
The Pebbling Problem is Complete in Polynomial Space. SIAM J. Comput. 9(3): 513-524 (1980)
1970 – 1979
- 1979
- [b1]Thomas Lengauer:
Upper and lower bounds on time-space tradeoffs in a pebble game. Stanford University, USA, 1979 - [j1]Thomas Lengauer, Robert Endre Tarjan:
A Fast Algorithm for Finding Dominators in a Flowgraph. ACM Trans. Program. Lang. Syst. 1(1): 121-141 (1979) - [c2]John R. Gilbert, Thomas Lengauer, Robert Endre Tarjan:
The Pebbling Problem is Complete in Polynomial Space. STOC 1979: 237-248 - [c1]Thomas Lengauer, Robert Endre Tarjan:
Upper and Lower Bounds on Time-Space Tradeoffs. STOC 1979: 262-277
Coauthor Index
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