Commits

Branch selector

 master

User selector

All users

All time

Commit History

Commits on Mar 30, 2026

• Merge pull request #369 from labgem/dev

  Show description for c8a1bfa
  JeanMainguy

  authored
  c8a1bfa

  Copy full SHA for c8a1bfa

• removed maxos 13 from pypi CI because it is not supported by github anymore

  JeanMainguy

  committed
  04fa191

  Copy full SHA for 04fa191

Commits on Mar 27, 2026

• bump version in expected info files

  JeanMainguy

  committed
  d92b4c6

  Copy full SHA for d92b4c6

• bump version

  JeanMainguy

  committed
  f3222e7

  Copy full SHA for f3222e7

• Merge pull request #366 from samuelortion/dev

  Show description for 4fc9c57
  JeanMainguy

  authored
  4fc9c57

  Copy full SHA for 4fc9c57

Commits on Mar 24, 2026

• Merge pull request #367 from labgem/fix_genetic_code_management

  Show description for 9246da7
  JeanMainguy

  authored
  9246da7

  Copy full SHA for 9246da7

• Merge pull request #368 from labgem/fix_pyrodigal_mode

  Show description for 63d0a28
  JeanMainguy

  authored
  63d0a28

  Copy full SHA for 63d0a28

Commits on Mar 20, 2026

• check in parameter if table not in status to ensure compatibility

  JeanMainguy

  committed
  61f5d7c

  Copy full SHA for 61f5d7c

Commits on Mar 17, 2026

• apply black

  JeanMainguy

  committed
  c6b4ee1

  Copy full SHA for c6b4ee1

• Apply suggestions from code review

  Show description for f07073b
  

  JeanMainguy

  and

  Copilot

  authored
  f07073b

  Copy full SHA for f07073b

• Apply suggestions from code review

  Show description for e1c8385
  

  JeanMainguy

  and

  Copilot

  authored
  e1c8385

  Copy full SHA for e1c8385

• Potential fix for pull request finding

  Show description for fc74f0f
  

  JeanMainguy

  and

  Copilot

  authored
  fc74f0f

  Copy full SHA for fc74f0f

• update expected results

  JeanMainguy

  committed
  6809116

  Copy full SHA for 6809116

• fix typo in comment

  JeanMainguy

  committed
  1e86255

  Copy full SHA for 1e86255

• always publish artifact in CI

  JeanMainguy

  committed
  9985e45

  Copy full SHA for 9985e45

Commits on Mar 6, 2026

• set min_mask option to prevent long runs of N in gene prediction

  JeanMainguy

  committed
  b6263c5

  Copy full SHA for b6263c5

Commits on Feb 27, 2026

• update expected results as a very fragmented genomes is included in test dataset and therefore is impacted by meta mode change

  JeanMainguy

  committed
  b3b27d9

  Copy full SHA for b3b27d9

• fix warning if

  JeanMainguy

  committed
  2d2ae86

  Copy full SHA for 2d2ae86

• trigger meta mode only if genome is < 20kb

  JeanMainguy

  committed
  b5d6c7c

  Copy full SHA for b5d6c7c

• Merge pull request #365 from labgem/fix-fasta-in-gff3

  Show description for ac8df04
  JeanMainguy

  authored
  ac8df04

  Copy full SHA for ac8df04

Commits on Feb 26, 2026

• apply black

  JeanMainguy

  committed
  f49dbb8

  Copy full SHA for f49dbb8

• when translation_table not found in status it is set to None

  JeanMainguy

  committed
  7ab553e

  Copy full SHA for 7ab553e

• imrpove translation_table help of annotate and workflow

  JeanMainguy

  committed
  d311885

  Copy full SHA for d311885

• update info file with translation table new info

  JeanMainguy

  committed
  23c452b

  Copy full SHA for 23c452b

• homogenize transl table management across cmds

  JeanMainguy

  committed
  88860d6

  Copy full SHA for 88860d6

• add translation_table to status

  JeanMainguy

  committed
  54fcbbd

  Copy full SHA for 54fcbbd

• add translation_table to status

  JeanMainguy

  committed
  f575e29

  Copy full SHA for f575e29

Commits on Feb 25, 2026

• fix: drop distinction between rand and random function in NEM

  Show description for 0ff00f6
  samuelortion

  committed
  0ff00f6

  Copy full SHA for 0ff00f6

• add fasta in gff test

  JeanMainguy

  committed
  9cdf04b

  Copy full SHA for 9cdf04b

• improve transl table management

  JeanMainguy

  committed
  217a83f

  Copy full SHA for 217a83f

Commits on Dec 16, 2025

• in 'mp_write_genomes_file' rename 'organisms_file' to 'genome_file' as it is named like this in the 'write_flat_genome_files' function setting up the parameters, so that the fasta sequences can be …

  Show description for 12831ab
  axbazin

  committed
  12831ab

  Copy full SHA for 12831ab

Commits on Nov 20, 2025

• Merge pull request #362 from labgem/dev

  Show description for 1f2b9cc
  JeanMainguy

  authored
  1f2b9cc

  Copy full SHA for 1f2b9cc

Commits on Nov 19, 2025

• bump version 2.2.6

  JeanMainguy

  committed
  e771847

  Copy full SHA for e771847

• Merge pull request #343 from labgem/fix_help_message_of_write_pangenome

  Show description for d836e19
  JeanMainguy

  authored
  d836e19

  Copy full SHA for d836e19

• Merge pull request #359 from labgem/improve_metadata_memory

  Show description for 98529a6
  JeanMainguy

  authored
  98529a6

  Copy full SHA for 98529a6