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Commits on Jul 20, 2020

• Fixup input label maps used to create tissue probability maps

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• Fix input label maps used to create tissue probability maps

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Commits on Jan 13, 2020

• Exclude two images from dHCP 2019 brain atlas construction, 340 images remaining

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• Add brief description of apply-global-dofs

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• Exclude 2 subjects from initial set of 342 selected for dHCP 2019 atlas construction

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• Add apply-global-dofs script

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• Add GM+WM masks of reference images

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Commits on Jan 12, 2020

• Add symbolic link for default 'weights' folder

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• Fix include of params.sh script

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• Use kernel weight files for constant sigma, adjust non-rigid registration params

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Commits on Dec 28, 2019

• fix: Correct ages.csv that matches subjects.lst

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Commits on Dec 25, 2019

• enh: Set parameters selected for new dHCP atlas construction

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Commits on Dec 23, 2019

• Add kernel weights for 28 weeks PMA of 2019 dHCP atlas

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Commits on Dec 22, 2019

• fix: DAG node names for global normalization

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• fix: Global alignment to reference image

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Commits on Dec 21, 2019

• fix: Separate folders for transformed 'tissues' and 'structures'

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• enh: Remove test exit statement, reduce initial grid search

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• fix: Affine alignment of very young preterm brain to week 40 reference for parameter search

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• enh: Use 'preproc' images that are rescaled to [0, 255] and cast to uchar

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Commits on Dec 20, 2019

• fix: Exclude scans from parameter search which fail in affine alignment

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• fix: Append parameters to params.csv

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• enh: Parameter search workflow

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• fix: Dependency graph of gen-parameter-search-refinement-stage workflow

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  a6ce598

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• enh: Remove unused NCC window radius parameter

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• add: Script to search parameters for iterative refinement

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• add: Subjects list for parameter search with MIRTK 2.1

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• enh: Add elasticity_lambda and elasticity_mu to dhcp-2019 params.sh config

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• enh: Add dHCP 2019 configuration file for iterative template construction

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• enh: Add registration parameters file for new dHCP atlas construction

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• enh: Add 'Linear elasticity' lambda and mu parameters

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  fb74c99

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• fix: Subject IDs concatenated with '-' not '_'

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• fix: transform_image_node with MIRTK AppImage

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• fix: Input paths in dhcp-2019 config

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• fix: Argument parsing in run-dagman and submit-dag-to-condor

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• enh: Rename config file

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