Dimensionality Reduction with Eilenberg-MacLane Coordinates

A tool for drawing ROIs on videos and analysing deeplabcut videos.

Code for "Adversarial Laser Beam: Effective Physical-World Attack to DNNs in a Blink" (CVPR 2021)

Headless DeepLabCut (no GUI support)

Schemata and libraries for neuroscientific data

[ECCV 2024] "Elucidating the Hierarchical Nature of Behavior with Masked Autoencoders"

Efficient cell detection in large images using cellfinder in napari

Official codebase for MammAlps

Standalone cellfinder cell detection algorithm

functions for for converting data from DeepLabCut formatting to DLTdv tools or Argus format

[NeurIPS 2022] DMAP: a Distributed Morphological Attention Policy for Learning to Locomote with a Changing Body

Code for Cadena, S. A, et al. (2019). Deep convolutional models improve predictions of macaque V1 responses to natural images. Plos Computational Biology

An alpha playground for a web-based labeling tool for DLC

Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.

Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.

Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).

DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.

Analysis of DLC results of different climbing lizard species

DLClibrary is a lightweight library supporting universal functions for the DeepLabCut ecosystem.

joystick system used in Mathis et al, 2017

A repository for a 3D ground truth data creation tool for the AcinoNet cheetah motion tracking paper

Collection of shared utilities to process and analyse behaviour data

A fork to optimize interval matching in the bootstrap case; also extends to data with arbitrary (precomputed) distance metrics.

https://adventofcode.com/2020

Fake It Till You Make It: Near-Distribution Novelty Detection by Score-Based Generative Models

Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049