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Commits on Apr 20, 2025

• renamed bin to src

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• Moved scripts to bin directory

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• deleted supplementary scripts

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• Delete envs directory

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Commits on Feb 20, 2025

• added main snakemake script

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Commits on Feb 9, 2025

• replaced prokka with bakta for annotation

  MalcolmorianVII

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• updated input & output of medaka & racon steps

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• split alignment step from the racon polishing

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• Delete analysisScripts/seq_stats.smk

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• Delete analysisScripts/bakta.sh

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Commits on Nov 16, 2024

• Update README.md

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• Delete reports directory

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Commits on Nov 13, 2024

• Delete analysisScripts/flyePolcaIsangiAnalysis.smk

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• Rename illuminaSeqAnalysis.smk to illumina_analysis.smk

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• Rename long_read_analysis.smk to Nanopore_analysis.smk

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• Rename isangiSeqAnalysis.smk to long_read_analysis.smk

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• Rename isangiNanoQc.smk to seq_stats.smk

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• Delete analysisScripts/isangiSeqAnalysis3.smk

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• Delete analysisScripts/isangiSeqAnalysis2.smk

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• Update README.md

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Commits on Jan 19, 2022

• Merge pull request #5 from MalcolmorianVII/multiSample

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• Code refactor

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• Deleted the file

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• Merge pull request #4 from MalcolmorianVII/multiSample

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• code refactor

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Commits on Jul 12, 2021

• Merge pull request #3 from MalcolmorianVII/multiSample

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• Added the assembly & polishing only script

  MalcolmorianVII

  committed
  fc4aede

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• Fixed input error in rule RaconX1

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Commits on Jul 9, 2021

• Merge pull request #2 from MalcolmorianVII/multiSample

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• Fixed wildcard error

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  8ab263b

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• tets

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  committed
  cfca56f

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• configured guppy snakemake script

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• Merge pull request #1 from MalcolmorianVII/multiSample

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• Added guppy5 snakemake script

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Commits on Jun 23, 2021

• Compiler of all Polca reports for a particular run

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