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This is a repository that houses the codes, figures and summarize data for our manuscript "Dietary inclusion of high Amylose cornstarch increased Lactobacillus and Terrisporobacter and decreased St…
R UpdatedFeb 6, 2025 -
This repository has codes, data summaries, and supplementary files for manuscript on metagenome-wide association study(WMAS) of bovine microbiome. We utilized rumen microbiota gene abundance to per…
R GNU General Public License v3.0 UpdatedFeb 6, 2025 -
Bovine-oral-microbiome Public
This repository contains codes, supplementary material and other datasets for our manuscript that investigates the early development of the bovine oral and rumen microbiota and compares whether the…
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Alternative splicing analysis of bulk rna seq data and expression analysis of human colon cancer samples
UpdatedJan 27, 2025 -
This repository contains codes, data, and supplementary files for our manuscript on the bovine rumen microbiota colonization history. Here, we investigate the colonization history of large beef cat…
GNU General Public License v3.0 UpdatedNov 7, 2024 -
PhD-Dissertation Public
Codes and files for my PhD research work
GNU General Public License v3.0 UpdatedNov 3, 2024 -
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patchwork Public
Forked from thomasp85/patchworkThe Composer of ggplots
R Other UpdatedJun 18, 2024 -
free-programming-books Public
Forked from EbookFoundation/free-programming-books📚 Freely available programming books
Creative Commons Attribution 4.0 International UpdatedJun 18, 2024 -
Taxonomic-Abundance-Mapping Public
Taxonomy Abundance Profiling of Metagenomic Reads
GNU General Public License v3.0 UpdatedJun 4, 2024 -
tong-s_must_read_list Public
Forked from TongZhou2017/tong-s_must_read_listpapers read list about biology, bioinformatics, and others
MIT License UpdatedSep 27, 2023 -
EasyAmplicon Public
Forked from YongxinLiu/EasyAmpliconEasy Amplicon data analysis pipeline
HTML Other UpdatedMar 11, 2023 -
easy_microbiome Public
Forked from taowenmicro/EasyMicrobiomeRUsing R language in microbiome analysis
HTML UpdatedMar 2, 2023 -
EasyMicrobiome Public
Forked from YongxinLiu/EasyMicrobiomeC GNU General Public License v3.0 UpdatedJan 30, 2023 -
ggClusterNet Public
Forked from taowenmicro/ggClusterNetMicrobial ecological network visualization clustering
R UpdatedJan 30, 2023 -
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R-workshops Public
Forked from unl-statistics/R-workshopsR workshop slides and information
HTML UpdatedDec 14, 2022 -
bioinformatics Public
Forked from ossu/bioinformatics🔬 Path to a free self-taught education in Bioinformatics!
UpdatedDec 13, 2022 -
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microbiome_analysis Public
Forked from yanhui09/microbiome_analysisRepository for the microbiome analysis
CSS UpdatedOct 30, 2022 -
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intro_python Public
Forked from benedictpaten/intro_pythonLecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
Jupyter Notebook MIT License UpdatedAug 18, 2022 -
doliolids Public
Forked from BikLab/doliolidsStore data and additional information related to the Doliolid Microbiome project
R UpdatedAug 17, 2022 -
ComplexHeatmap Public
Forked from jokergoo/ComplexHeatmapMake Complex Heatmaps
R Other UpdatedAug 5, 2022 -
ComplexHeatmap-reference Public
Forked from jokergoo/ComplexHeatmap-referenceDocumentation of ComplexHeatmap package
HTML Creative Commons Zero v1.0 Universal UpdatedJul 31, 2022 -
MDIBL-T3-WGS-Tutorial Public
Forked from Joseph7e/MDIBL-T3-WGS-TutorialBacterial Genome Assembly and Assessment
Python UpdatedJul 29, 2022 -
PythonDataScienceHandbook Public
Forked from jakevdp/PythonDataScienceHandbookPython Data Science Handbook: full text in Jupyter Notebooks
Jupyter Notebook MIT License UpdatedJul 24, 2022 -
Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
UpdatedJul 23, 2022 -
python-ecology-lesson Public
Forked from datacarpentry/python-ecology-lessonData Analysis and Visualization in Python for Ecologists
Jupyter Notebook Other UpdatedJul 8, 2022 -
HCGS_Metabarcoding_Tutorials Public
Forked from Joseph7e/HCGS_Metabarcoding_TutorialsWorkflow for qiime2 workshop
Shell UpdatedJul 2, 2022
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