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microbiomeDataSets Public
Forked from microbiome/microbiomeDataSetsExperiment Hub based microbiome datasets
R UpdatedSep 18, 2021 -
phyloseq-extended Public
Forked from mahendra-mariadassou/phyloseq-extendedVarious customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul
R GNU General Public License v3.0 UpdatedSep 9, 2021 -
OneLinerOmics Public
Forked from j-andrews7/OneLinerOmicsOne liner analyses and visualizations for bulk RNA-seq and ChIP-seq data
R GNU General Public License v3.0 UpdatedSep 2, 2021 -
probability Public
Forked from jakevdp/probabilityProbabilistic reasoning and statistical analysis in TensorFlow
Jupyter Notebook Apache License 2.0 UpdatedAug 27, 2021 -
course_2021_radboud Public
Forked from microbiome/course_2021_radboudRadboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/
TeX Other UpdatedAug 12, 2021 -
Metagenome Public
Forked from YongxinLiu/MetagenomeMetagenome analysis pipeline
Shell UpdatedJul 26, 2021 -
MicrobiomeStatPlot Public
Forked from YongxinLiu/MicrobiomeStatPlotInterpretation and visualization of microbiome charts
HTML GNU General Public License v3.0 UpdatedJul 26, 2021 -
oxforddown-murdoch Public
Forked from siobhon-egan/oxforddown-murdochTemplate for thesis writing in Rmarkdown
TeX MIT License UpdatedJul 4, 2021 -
DMP Public
Forked from GRONINGEN-MICROBIOME-CENTRE/DMPCodes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from…
HTML UpdatedJun 24, 2021 -
Deng-2020 Public
Forked from colemanderr-lab/Deng-2020Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome
HTML UpdatedMay 28, 2021 -
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labs Public
Forked from genomicsclass/labsRmd source files for the HarvardX series PH525x
R MIT License UpdatedMay 8, 2021 -
biom Public
Forked from joey711/biomDevelopment version of the biom package for R
R UpdatedApr 13, 2021 -
PigARGs Public
Forked from zhouyunyan/PigARGsCodes related to the manuscript "Characteristics and host bacteria of resistome in pigs raised in farms with different management patterns".
R UpdatedApr 5, 2021 -
awesome-genome-visualization Public
Forked from cmdcolin/awesome-genome-visualizationA list of interesting genome browser or genome-browser-like implementations
JavaScript UpdatedApr 2, 2021 -
courses-1 Public
Forked from DataScienceSpecialization/coursesCourse materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
HTML UpdatedMar 30, 2021 -
phyloseq Public
Forked from joey711/phyloseqphyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …
R UpdatedFeb 26, 2021 -
iMGMC Public
Forked from strowig-lab/iMGMCRepository of the integrated mouse gut metagenomic catalog
Shell GNU General Public License v3.0 UpdatedJan 4, 2021 -
ads2020 Public
Forked from jtleek/ads2020Advanced Data Science 2020 Edition
CSS UpdatedJan 4, 2021 -
PIGC Public
Forked from zhouyunyan/PIGCThe construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
R UpdatedJan 4, 2021 -
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data-science-from-scratch Public
Forked from ahnishida/data-science-from-scratchcode for Data Science From Scratch book
Python MIT License UpdatedNov 18, 2020 -
Target-Enrichment-of-Metazoan-Mitochondrial-DNA-with-Hybridization-Capture-Probes Public
Forked from Joseph7e/Target-Enrichment-of-Metazoan-Mitochondrial-DNA-with-Hybridization-Capture-Probescode and tutorials for data analyses related to the manuscript submitted to Ecological Indicators
Python UpdatedOct 1, 2020 -
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circlize_examples Public
Forked from jokergoo/circlize_examplescirclize examples
HTML UpdatedJun 23, 2020 -
hospital_microbiome Public
Forked from lch14forever/hospital_microbiomeHTML MIT License UpdatedJun 8, 2020 -
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Groningen-Microbiome Public
Forked from alexa-kur/Groningen-MicrobiomeMicrobiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
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nematode-rRNA-variants Public
Forked from BikLab/nematode-rRNA-variantsProtocols, scripts, and analyses carried out for Nematode rRNA Variants manuscript
R UpdatedFeb 24, 2020
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