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Commits on Feb 15, 2018

• normalize vep names. closes #887

  brentp

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Commits on Dec 13, 2017

• remove nosudo from docs

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Commits on Dec 8, 2017

• bump requirements. closes #879

  brentp

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Commits on Nov 9, 2017

• test for write access before amend and annotation_provenance

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  brentp

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• browser: emtpy gt_filter is set to None

  brentp

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Commits on Oct 1, 2017

• Merge pull request #873 from brentp/clinvar

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• note

  brentp

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Commits on Sep 28, 2017

• Merge pull request #872 from brentp/unicode

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• fix unicode errors on load and on gemini annotate

  brentp

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Commits on Sep 19, 2017

• fix loading for ipython multicore if vcf is not in pwd

  brentp

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Commits on Aug 18, 2017

• Merge branch 'master' of github.com:arq5x/gemini

  

  arq5x

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• minor formatting error

  

  arq5x

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Commits on Aug 16, 2017

• update docs show gnomad included in max_aaf_all

  brentp

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Commits on Jul 25, 2017

• update genewise test

  brentp

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Commits on Jul 22, 2017

• Merge pull request #863 from brentp/genewisey

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• allow showing per-sample gt stuff in genewise

  brentp

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Commits on Jul 21, 2017

• Merge pull request #862 from brentp/genewisex

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• fix genewise again

  brentp

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• Merge pull request #861 from brentp/genewiser

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• re-fix genewise

  brentp

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• Merge pull request #860 from brentp/genewise-userdict

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• fix bug reported by @jxchong

  brentp

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Commits on Jul 19, 2017

• Merge pull request #859 from brentp/gnomad-up

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• Merge branch 'master' of https://github.com/arq5x/gemini into gnomad-up

  brentp

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• update history and install-data for newest gnomad

  brentp

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Commits on Jul 18, 2017

• Merge pull request #856 from mbootwalla/gnomad_fix

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  brentp

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• Merge pull request #857 from brentp/genewise-count

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• genewise: only show variants that meet the require number of optional filters

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Commits on Jul 17, 2017

• Added a fix to make-gnomad.sh perl regex to avoid removing AF column from INFO field of multi-allelic sites in gnomad exomes vcf

  

  Moiz Bootwalla

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Commits on Jun 9, 2017

• Install: ensure conda-forge in conda channels

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  chapmanb

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Commits on May 29, 2017

• Install: avoid certificate issues on AWS downloads

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Commits on May 20, 2017

• Avoid checking Miniconda certificate. Fixes #845

  chapmanb

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Commits on May 2, 2017

• Merge pull request #842 from brentp/ch-where

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• allow specifying gene selection in comp-het tool

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  brentp

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• Merge pull request #841 from brentp/issue-839

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