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183 stars written in Python
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A tool for evaluating the predictive performance on activity cliff compounds of machine learning models

Python 195 25 Updated Feb 15, 2025

Open source code for TankBind. Galixir Tenchnologies

Python 170 53 Updated Nov 1, 2023

DeeplyTough: Learning Structural Comparison of Protein Binding Sites

Python 167 40 Updated Apr 7, 2023

Simple package for fast molecular similarity searches

Python 156 22 Updated Sep 6, 2025

Python package for missing-data imputation with deep learning

Python 156 39 Updated Aug 31, 2024

Pre-trained Multimodal Large Language Model Enhances Dermatological Diagnosis using SkinGPT-4

Python 155 34 Updated Jul 13, 2024

A single model for all your molecular design tasks

Python 154 16 Updated Sep 17, 2025

A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

Python 145 19 Updated Apr 20, 2022
Python 142 28 Updated Jul 31, 2025

A short and easy PyTorch implementation of E(n) Equivariant Graph Neural Networks

Python 139 12 Updated Jan 14, 2022

3D molecular fingerprints

Python 136 35 Updated Feb 4, 2025
Python 133 35 Updated Nov 6, 2022

Convolution in the Cloud: Learning Deformable Kernels in 3D Graph Convolution Networks for Point Cloud Analysis

Python 132 16 Updated Apr 26, 2024

Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation

Python 132 46 Updated Jul 21, 2023
Python 125 20 Updated Aug 8, 2024

machine learning, molecular descriptor

Python 118 65 Updated Apr 10, 2023

codes for KPGT (Knowledge-guided Pre-training of Graph Transformer)

Python 116 18 Updated Sep 17, 2024

Diffusion model based protein-ligand flexible docking method

Python 114 15 Updated Oct 30, 2024

Deep learning based image similarity search for product recommendations

Python 113 36 Updated Jun 17, 2018
Python 109 21 Updated Apr 17, 2023

Code for the paper "JANUS: Parallel Tempered Genetic Algorithm Guided by Deep Neural Networks for Inverse Molecular Design"

Python 86 15 Updated Jul 27, 2022

AI-powered Virtual Screening

Python 85 26 Updated Jun 23, 2023

RL-GraphINVENT is a platform for graph-based targeted molecular generation using graph neural networks and reinforcement learning. RL-GraphINVENT uses a Gated Graph Neural Network -based model fine…

Python 78 20 Updated May 11, 2023

Clean Python Implementation of the Deep Deterministic Policy Gradients Algorithm

Python 78 28 Updated Jan 11, 2017

A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation

Python 76 11 Updated Aug 12, 2025

[TMLR 2023] Simulate time-integrated coarse-grained MD with multi-scale graph neural networks

Python 72 9 Updated Aug 26, 2023
Python 70 14 Updated Dec 20, 2023

A python toolkit for analysing membrane protein-lipid interactions.

Python 68 30 Updated Oct 22, 2025

Dynamic Graph Convolutional Neural Network for 3D point cloud semantic segmentation

Python 65 11 Updated Nov 7, 2018