Hi,

If I run "macs14 -t treatment_file_name.bed -c control_file_name.bed -f BED -n result_name_prefix -g mm -s 50 -m 10,30 --bw 180 -p 1e-4", the results files have, as expected, "result_name_prefix" as their prefix.

However, if I run the same command with the -nolambda option, the -n option is ignored and "olambda" is used instead.

This behavior is particularly annoying when running scripts with multiple combinations of input files, since each output will erase the previous one. Is there any way around in MACS (i.e. without rewriting the script launching MACS)?

Best,

Sébastien