Hi,
Thank you for your great work.
I tested the released ST decoder on TENX152. The decoder output has shape [N, 2000], but I am unsure how these 2000 dimensions correspond to specific genes. Currently, I can only interpret them as gene_0, gene_1, ..., gene_1999.
Could you please clarify:
- Where can I find the gene list and gene ordering used by the decoder?
- Which dataset was used to train the decoder?
- Is the released decoder expected to work directly on TENX152, or does it require dataset-specific gene alignment/preprocessing?
I am currently obtaining a very low mean PCC and would like to verify whether I am using the correct gene mapping.
I have attached a screenshot of the evaluation results for reference.
Thank you very much.

Hi,
Thank you for your great work.
I tested the released ST decoder on TENX152. The decoder output has shape [N, 2000], but I am unsure how these 2000 dimensions correspond to specific genes. Currently, I can only interpret them as gene_0, gene_1, ..., gene_1999.
Could you please clarify:
I am currently obtaining a very low mean PCC and would like to verify whether I am using the correct gene mapping.
I have attached a screenshot of the evaluation results for reference.
Thank you very much.