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Commits on Aug 18, 2025

• Merge pull request #363 from Enakshi-Saha/SEAHORSE

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Commits on Jul 26, 2025

• 1.6.2 (#354)

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Commits on Jan 31, 2025

• 1.6.2 (#339)

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Commits on Oct 10, 2024

• Merge pull request #331 from netZoo/build_patches

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Commits on Oct 9, 2024

• Changed all instances of deprecated igraph function get.adjacency() to as_adjacency_matrix()

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• Changed all instances of deprecated igraph function graph.adjacency() to graph_from_adjacency_matrix()

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• Changed all instances of deprecated igraph function graph.edgelist() to graph_from_edgelist()

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• Changed all instances of deprecated igraph function multilevel.community() to cluster_louvain()

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• Changed all instances of deprecated igraph function is.connected() to is_connected()

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• Changed all instances of deprecated igraph function induced.subgraph() to induced_subgraph()

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• Changed all instances of deprecated igraph function clusters() to components()

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• Changed all instances of deprecated igraph function graph.data.frame() to graph_grom_data_frame()

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• Reverted PANDA numpy conversion to previous version, as previous issue was due to build configuration

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Commits on Oct 1, 2024

• Removed all extra files created during build

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Commits on Sep 30, 2024

• Added a 'current' network for the createPandaStyle() visualization example.

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Commits on Sep 28, 2024

• Modified line widths to address build note

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Commits on Sep 27, 2024

• Removed comparisons between class and string

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• Removed attachment of CONDOR object to fix build warning

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• Fixed all missing reference issues

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• Removed extra import of Biobase

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• Fixed documentation issue for bladder and skin examples from YARN

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• Fixed C stack usage error caused by formatting reticulate Python output

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Commits on Sep 25, 2024

• Removed debugging statements in PANDA test

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• Updated parameters for pandaPy call

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• Fixed WAMpanda formatting issue

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Commits on Sep 24, 2024

• Fixed call to pandaPy in visPandaInCytoscape example

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• Deleted unused line which caused issues with environment variable access

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• Added color brewer reference to fix plotting example in YARN

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• Changed monster example to use current regulatory network accessor from PANDA

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• Reduced number of cores in example so that the example runs on all systems

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Commits on Sep 23, 2024

• Fixed issue with Cytoscape network not rendering in createPandaStyle() call.

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• Corrected checkMisAnnotation call examples

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• Fixed PUMA example with pandaObj call

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• Merge pull request #330 from netZoo/master

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Commits on Sep 20, 2024

• Merge pull request #329 from netZoo/devel

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