Description of the bug
From Slack: https://nfcore.slack.com/archives/CE9MS66BS/p1722497986985729
Looks like input samples/assemblies with mismatching IDs might be able to slip past the check (perhaps under certain circumstances) - which means the pipeline builds bowtie2 indexes and then doesn't send any reads for mapping, causing downstream errors. Should look into this and figure out where the error is.
Command used and terminal output
No response
Relevant files
No response
System information
No response
Description of the bug
From Slack: https://nfcore.slack.com/archives/CE9MS66BS/p1722497986985729
Looks like input samples/assemblies with mismatching IDs might be able to slip past the check (perhaps under certain circumstances) - which means the pipeline builds bowtie2 indexes and then doesn't send any reads for mapping, causing downstream errors. Should look into this and figure out where the error is.
Command used and terminal output
No response
Relevant files
No response
System information
No response