Skip to content

read count distribution vs. BAM depth #40

@AlkaidWang

Description

@AlkaidWang

Dear,

I noticed a question on the numbers from "_dis" files (read count distribution). In "_dis" files, each number means the reads count of a specific repeat length, so the sum of each line is the coverage depth of this region, right? However, using IGV or "samtools depth" to get the depth number from BAM files is different from the sum of each line from "_dis " files. I am wondering is there any filtration when doing the read count distribution ?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions