-
-
shotgun-metagomics-pipeline Public
A snakemake pipeline for performing read and assembly based shotgun metagenomics from QC to statistical analysis and visualizations
-
CRISPResso2 Public
Forked from pinellolab/CRISPResso2Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Python Other UpdatedMay 4, 2021 -
Data-science Public
Forked from CodeCutTech/Data-scienceCollection of useful data science topics along with code and articles
Jupyter Notebook UpdatedApr 6, 2021 -
code Public
Forked from dataprofessor/codeCompilation of R and Python programming codes on the Data Professor YouTube channel.
Jupyter Notebook UpdatedJan 22, 2021 -
computer-science Public
Forked from ossu/computer-science🎓 Path to a free self-taught education in Computer Science!
MIT License UpdatedDec 29, 2020 -
Dockerfiles Public
Forked from Medalibi/DockerfilesDocker projects for bioinformatics tools
Dockerfile GNU General Public License v3.0 UpdatedNov 16, 2020 -
free_r_tips Public
Forked from business-science/free_r_tipsFree R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every Tuesday.
HTML UpdatedNov 10, 2020 -
awesome-network-analysis Public
Forked from briatte/awesome-network-analysisA curated list of awesome network analysis resources.
R UpdatedOct 28, 2020 -
phyloseq-extended Public
Forked from mahendra-mariadassou/phyloseq-extendedVarious customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" provided by the platforms Migale and Genotoul
R GNU General Public License v3.0 UpdatedOct 9, 2020 -
microbiome_helper Public
Forked from LangilleLab/microbiome_helperA repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Python GNU General Public License v3.0 UpdatedOct 4, 2020 -
kneaddata Public
Forked from biobakery/kneaddataQuality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
Python Other UpdatedSep 25, 2020 -
CyVerese_SNP_calling_webinar Public
Forked from bcbc-group/CyVerese_SNP_calling_webinarShell UpdatedSep 11, 2020 -
bioinformatics_primer Public
Forked from kyclark/bioinformatics_primerBioinformatics with Unix, bash, Make, Python, and parallel
Python MIT License UpdatedAug 17, 2020 -
SpiecEasi Public
Forked from zdk123/SpiecEasiSparse InversE Covariance estimation for Ecological Association and Statistical Inference
R UpdatedJul 13, 2020 -
non-model_RNA_Seq Public
Pipeline to perform RNA-Seq analysis for non-model organisms
Shell UpdatedJun 4, 2020 -
-
-
-
networkD3 Public
Forked from christophergandrud/networkD3D3 JavaScript Network Graphs from R
R UpdatedFeb 25, 2020 -
-
16s_pathogen_analysis Public
This repository contains files needed to run pathogen analysis using amplicon sequences and QIIME (OTU table, scripts and mapping file)
-
Trinotate Public
Forked from Trinotate/TrinotateTrinotate source code
JavaScript Other UpdatedFeb 3, 2020 -
GWA_tutorial Public
Forked from MareesAT/GWA_tutorialA comprehensive tutorial about GWAS and PRS
UpdatedJan 3, 2020 -
biosql Public
Forked from biosql/biosqlPerl GNU Lesser General Public License v3.0 UpdatedFeb 18, 2019 -
biopieces Public
Forked from maasha/biopiecesBiopieces is a bioinformatic framework of tools easily used and easily created.
Perl GNU General Public License v2.0 UpdatedAug 2, 2018 -
-
snakemake_assemble Public
Forked from tanaes/snakemake_assembleModular snakemake workflow for assembly-based metagenomics
Jupyter Notebook MIT License UpdatedSep 8, 2017 -
metag-rev-sup Public
Forked from chrisquince/metag-rev-supmetag-rev-sup
Python UpdatedJun 21, 2017
{{ message }}