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in <code>ontoweave</code> allow different separators for different data files

Status: Closed (completed).

Feature

#141 In oncodash/ontoweaver;

· by emanuele-quaglio was closed on Dec 16, 2025

Display pandera validations errors all in once instead of one after the other

enhancementImprovement over an existing featureImprovement over an existing feature

Status: Closed (completed).

Feature

#174 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 16, 2025

Update logging

Status: Closed (completed).

Feature

#165 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 16, 2025

Same property field showing same value

documentationImprovements or additions to documentationImprovements or additions to documentation

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

Task

#135 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 16, 2025

A boolean transformer

Status: Closed (completed).

Feature

#122 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 16, 2025

About NaN and NoneType

Status: Closed (completed).

#73 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 16, 2025

Logo not displaying on github readme.

Status: Closed (completed).

Bug

#150 In oncodash/ontoweaver;

· by mbaric758 was closed on Dec 16, 2025

Add the Python script for running OntoWeaver in readthedocs in addition to CLI

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Closed (completed).

Task

#92 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 16, 2025

Order nodes and edges after reconciliating

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

Feature

#116 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 16, 2025

Composition fo transformers

Status: Closed (completed).

Feature

#118 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 12, 2025

Add dbms.usage_report.enabled=False in the documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Closed (completed).

Feature

#157 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 12, 2025

New transformer for the extraction of types or property names on the fly

Status: Closed (completed).

Feature

#155 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 12, 2025

change logging level for branching(s)

Status: Closed (completed).

Feature

#166 In oncodash/ontoweaver;

· by njmmatthieu was closed on Dec 9, 2025

Default reconciliation separator

Status: Closed (completed).

Bug

#161 In oncodash/ontoweaver;

· by mbaric758 was closed on Dec 9, 2025

Data frames cannot be loaded in memory, because in memory df not hashable.

Status: Closed (completed).

Bug

#110 In oncodash/ontoweaver;

· by mbaric758 was closed on Mar 6, 2025

Add setter functions for Edge or GenericEdge.

Status: Closed (completed).

Bug

#104 In oncodash/ontoweaver;

· by mbaric758 was closed on Mar 4, 2025

Multi type transformers cannot be used on subject.

Status: Closed (completed).

Bug

#127 In oncodash/ontoweaver;

· by mbaric758 was closed on Apr 10, 2025

BioCypher <code>0.10.0</code> issue.

biocypherBug related to BioCypherBug related to BioCypher

Status: Closed (completed).

#158 In oncodash/ontoweaver;

· by mbaric758 was closed on Aug 6, 2025

<code>final_type</code> not working for <code>SimpleLabelMaker</code> class, and properties and metadata not present on nodes on which the <code>SimpleLabelMaker</code> is used.

Status: Closed (completed).

Bug

#152 In oncodash/ontoweaver;

· by mbaric758 was closed on May 19, 2025

ReadTheDocs is not building because <code>sphinx_rtd_theme</code> is not defined in the requirements.

Status: Closed (completed).

Bug

#133 In oncodash/ontoweaver;

· by mbaric758 was closed on Apr 23, 2025

rowIndex as object

biocypherBug related to BioCypherBug related to BioCypher

documentationImprovements or additions to documentationImprovements or additions to documentation

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

#147 In oncodash/ontoweaver;

· by emanuele-quaglio was closed on May 19, 2025

Refactor testing and readme to consistently use new extraction and reconciliation functions instead of extract_all.

refactoring

Status: Closed (completed).

#63 In oncodash/ontoweaver;

· by mbaric758 was closed on Mar 11, 2025

Make message collecting differentiate between errors and warnings

enhancementImprovement over an existing featureImprovement over an existing feature

Status: Closed (completed).

#68 In oncodash/ontoweaver;

· by jdreo was closed on Apr 11, 2025

data validation in mappings

enhancementImprovement over an existing featureImprovement over an existing feature

Status: Closed (completed).

#85 In oncodash/ontoweaver;

· by jdreo was closed on Jan 30, 2025

Multi-types transformers interface

Status: Closed (completed).

#89 In oncodash/ontoweaver;

· by jdreo was closed on Mar 6, 2025