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@CU-DBMI University of Colorado Department of Biomedical Informatics

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    13 repositories

    • set-website

      Public
      Website for the software engineering team (SET)
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •436•1•2•1•Updated Apr 8, 2026Apr 8, 2026

    • buddi_v2

      Public
      This is a refactored version of the original BuDDI model—rewritten enough that it felt better to make it a separate repo instead of a fork. BuDDI v2 also fully …
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 23, 2025May 23, 2025

    • pmc-crawler

      Public
      Crawls PMC for publications by specified authors
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • state-cancer-profile-scraper

      Public
      State cancer profiles scraper
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • PONG

      Public
      C++
      •
      Other
      •2•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • dbmi_seminar

      Public
      @cu-dbmi seminar committee material
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • rootstock

      Public
      TEST for Manubot AI Editor
      HTML
      •
      Other
      •190•0•0•1•Updated Jul 17, 2024Jul 17, 2024

    • healthcare-data-harmonization

      Public
      This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompanying syntax to make wri…
      Java
      •
      Apache License 2.0
      •76•2•0•0•Updated Mar 24, 2024Mar 24, 2024

    • RTX-KG2

      Public
      Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
      Python
      •
      MIT License
      •11•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • CCPM-IO.github

      Public
      A special GitHub repository for setting the CCPM-IO organization profile and default community health files.
      2•0•0•0•Updated Nov 13, 2023Nov 13, 2023

    • rxivist

      Public
      API providing access to papers and authors scraped from biorxiv.org
      Python
      •
      GNU Affero General Public License v3.0
      •11•0•0•0•Updated Oct 6, 2022Oct 6, 2022

    • awesome-single-cell

      Public
      Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
      MIT License
      •1.1k•0•0•0•Updated Dec 31, 2021Dec 31, 2021

    • locust-k8s-loadtester

      Public
      Distributed load testing using Kubernetes on Google Container Engine
      Python
      •
      Apache License 2.0
      •254•0•0•0•Updated Nov 4, 2021Nov 4, 2021
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