Repositories list

• gene_circuit_design

  Public
  Python

  •1•2•0•0•Updated Dec 22, 2025Dec 22, 2025

• evo2_embeddings

  Public
  Genome modeling and design across all domains of life

  Python

  •375•0•0•0•Updated Dec 13, 2025Dec 13, 2025

• Game_of_Life

  Public
  Python

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• evo_embeddings

  Public
  Biological foundation modeling from molecular to genome scale

  Python

  •179•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• evolution-hierarchy

  Public
  evolution across layers of phenotype trait

  Python

  •

  MIT License

  •0•1•0•0•Updated Dec 11, 2025Dec 11, 2025

• cellethology.github.io

  Public
  JavaScript

  •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

• enformer-embeddings

  Public
  Python

  •0•0•0•0•Updated Dec 6, 2025Dec 6, 2025

• gLM2

  Public
  Python

  •8•0•0•0•Updated Dec 2, 2025Dec 2, 2025

• GENERanno_embeddings

  Public
  GENERanno: A Genomic Foundation Model for Metagenomic Annotation

  Python

  •57•0•0•0•Updated Dec 1, 2025Dec 1, 2025

• sei-framework

  Public
  code to run sei and obtain sei and sequence class predictions

  Python

  •10•0•0•0•Updated Nov 27, 2025Nov 27, 2025

• tic

  Public
  A Unified Framework for Temporal and Causal Inference in Tumor Microenvironments.

  machine-learningbioinformaticsspatial-transcriptomics

  Jupyter Notebook

  •0•7•0•0•Updated Jul 15, 2025Jul 15, 2025

• GLM-Nullsette-Benchmark

  Public
  This is the repository for benchmarking genomic language model on Nullsettes.

  Python

  •

  MIT License

  •0•2•0•0•Updated May 25, 2025May 25, 2025

• morpheus-spatial

  Public
  Counterfactual generation of tumor perturbations from multiplexed tissue images

  Jupyter Notebook

  •2•23•2•0•Updated May 13, 2025May 13, 2025

• AL-pipe

  Public
  Python

  •1•0•0•0•Updated Apr 17, 2025Apr 17, 2025