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    188 repositories

    • sodar-server

      Public
      SODAR: System for Omics Data Access and Retrieval
      Python
      •
      MIT License
      •4•21•363•0•Updated Jul 2, 2026Jul 2, 2026

    • cbio-ingest-cli

      Public
      CLI for the cbio-ingest REST API
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • cbio-ingest

      Public
      REST API for uploading data to cBioPortal
      Python
      •
      MIT License
      •0•0•0•2•Updated Jul 1, 2026Jul 1, 2026

    • seasnap-pipeline

      Public
      SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
      Python
      •2•1•25•4•Updated Jun 30, 2026Jun 30, 2026

    • bioshmods

      Public
      Shiny modules for bioinformatics
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 29, 2026Jun 29, 2026

    • seaPiper

      Public
      Workflow output explorer for sea-snap
      R
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Jun 29, 2026Jun 29, 2026

    • svirlpool

      Public
      Svirlpool: structural variant detection from long read sequencing by local assembly
      Python
      •
      MIT License
      •0•8•4•0•Updated Jun 29, 2026Jun 29, 2026

    • cubi-tk

      Public
      CUBI Tooling for SODAR, VarFish et al.
      Python
      •
      MIT License
      •5•5•36•8•Updated Jun 26, 2026Jun 26, 2026

    • snappy-pipeline

      Public
      SNAPPY Nucleic Acid Processing in Python
      Python
      •
      MIT License
      •6•10•111•18•Updated Jun 26, 2026Jun 26, 2026

    • sodar-django-site

      Public
      Django site template for SODAR Core based projects
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 26, 2026Jun 26, 2026

    • sodar-core

      Public
      SODAR Core: A Django-based framework for building scientific data management web apps
      Python
      •
      MIT License
      •1•13•212•0•Updated Jun 25, 2026Jun 25, 2026

    • reev-frontend-lib

      Public
      Re-useable components from REEV
      TypeScript
      •1•0•1•12•Updated Jun 25, 2026Jun 25, 2026

    • kiosc-server

      Public
      Self-hosting and orchestration of Docker containers for web apps.
      dockerdjangoweb-apps
      dockerdjangoweb-apps
      Python
      •
      MIT License
      •1•2•45•3•Updated Jun 23, 2026Jun 23, 2026

    • kiosc-docker-compose

      Public
      Docker compose deployment of kiosc-server
      Makefile
      •
      MIT License
      •0•0•1•0•Updated Jun 23, 2026Jun 23, 2026

    • bih-cluster

      Public
      BIH Cluster Wiki
      Awk
      •
      Other
      •34•19•7•1•Updated Jun 22, 2026Jun 22, 2026

    • hpc-access

      Public
      Web interface for managing access and resource requests for the BIH cluster
      Python
      •
      MIT License
      •0•0•43•11•Updated Jun 15, 2026Jun 15, 2026

    • sssd-docker

      Public
      Dockerized SSSD for dockerized iRODS deployments
      Dockerfile
      •
      MIT License
      •0•0•1•0•Updated Jun 11, 2026Jun 11, 2026

    • irods-docker

      Public
      iRODS Docker image for use with SODAR
      Jinja
      •
      MIT License
      •2•2•20•0•Updated Jun 5, 2026Jun 5, 2026

    • swibrid

      Public
      Python
      •0•0•0•0•Updated May 18, 2026May 18, 2026

    • CCISM

      Public
      Single Cell Identification of Tumor Cells by Expectation Maximization
      Python
      •
      MIT License
      •0•1•0•0•Updated May 14, 2026May 14, 2026

    • davrods-docker

      Public
      Davrods Docker image for use with SODAR
      Dockerfile
      •0•0•4•0•Updated May 13, 2026May 13, 2026

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •2•4•25•1•Updated May 13, 2026May 13, 2026

    • cubi-literature

      Public
      CUBI publications
      HTML
      •0•0•1•0•Updated May 6, 2026May 6, 2026

    • ood-bih-rstudio-server

      Public
      Open OnDemand App: RStudio Server
      Shell
      •
      MIT License
      •1•1•1•0•Updated May 6, 2026May 6, 2026

    • ood-bih-jupyter

      Public
      Open OnDemand App: Jupyter
      HTML
      •
      MIT License
      •1•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • reev

      Public
      REEV: Explanation and Evaluation of Variants
      TypeScript
      •
      MIT License
      •5•11•40•19•Updated Apr 27, 2026Apr 27, 2026

    • seasnap-pipeline-browser

      Public
      Docker image build instructions for the sea-snap pipeline browser
      R
      •0•0•0•0•Updated Apr 22, 2026Apr 22, 2026

    • circVDJseq_paper

      Public
      code repository for Plumbom & Obermayer et al.
      Jupyter Notebook
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • keycloak-theme-bihealth

      Public
      FreeMarker
      •1•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • nf-core-configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •365•1•0•1•Updated Mar 2, 2026Mar 2, 2026
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