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@bioinfo-biols Fangqing Zhao's Lab

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    15 repositories

    • ORCA

      Public
      Python
      •
      MIT License
      •2•9•2•0•Updated Jan 27, 2026Jan 27, 2026

    • MAGIC-seq

      Public
      Jupyter Notebook
      •1•6•0•0•Updated Dec 20, 2025Dec 20, 2025

    • Flow2Spatial

      Public
      Flow2Spatial reconstructs spatial proteomics through transfer learning.
      Python
      •
      GNU General Public License v3.0
      •4•22•0•0•Updated May 16, 2025May 16, 2025

    • SEVtras

      Public
      sEV-containing droplet identification in scRNA-seq data (SEVtras)
      Python
      •
      GNU Affero General Public License v3.0
      •8•26•29•0•Updated Feb 22, 2025Feb 22, 2025

    • RidgeSpace

      Public
      Unravelling three-dimensionally dynamics of spatial multi-modal data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•5•0•0•Updated Jan 22, 2025Jan 22, 2025

    • PROFIT-seq

      Public
      Programmable Full-length Transcriptome Sequencing
      CSS
      •
      MIT License
      •0•5•0•0•Updated Jul 9, 2024Jul 9, 2024

    • CIRIquant

      Public
      circular RNA quantification tools
      Perl
      •
      MIT License
      •19•31•35•2•Updated Jun 17, 2024Jun 17, 2024

    • CIRI-long

      Public
      Circular RNA Identification for Nanopore Sequencing
      Python
      •
      MIT License
      •6•22•13•0•Updated May 23, 2024May 23, 2024

    • CIRI-full

      Public
      Full length circRNA reconstruction and quantification using BSJ and reverse overlap (RO) features.
      Perl
      •2•4•3•0•Updated Mar 15, 2024Mar 15, 2024

    • Supplementary_materials_CiliateSymbiont_2024

      Public
      0•0•0•0•Updated Mar 9, 2024Mar 9, 2024

    • CIRI-cookbook

      Public
      Document for CIRI-series software
      Python
      •1•5•20•0•Updated Nov 30, 2023Nov 30, 2023

    • CIRI-vis

      Public
      Visualization of circular RNAs and their internal splicing events from transcriptomic data.
      0•0•3•0•Updated Sep 3, 2023Sep 3, 2023

    • FMT_Enterotype

      Public
      Analysis code for FMT enterotype paper
      HTML
      •
      GNU General Public License v3.0
      •0•4•2•0•Updated Dec 21, 2022Dec 21, 2022

    • Zhaolab

      Public
      Zhaolab
      0•1•0•0•Updated Jun 14, 2022Jun 14, 2022

    • Code_for_circSC

      Public
      Analysis pipeline for our circSC manuscript
      Python
      •
      GNU General Public License v3.0
      •5•14•0•0•Updated May 18, 2022May 18, 2022
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