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    • ORCA

      Public
      Python
      MIT License
      2920Updated Jan 27, 2026Jan 27, 2026
    • MAGIC-seq

      Public
      Jupyter Notebook
      1600Updated Dec 20, 2025Dec 20, 2025
    • Flow2Spatial reconstructs spatial proteomics through transfer learning.
      Python
      GNU General Public License v3.0
      42200Updated May 16, 2025May 16, 2025
    • SEVtras

      Public
      sEV-containing droplet identification in scRNA-seq data (SEVtras)
      Python
      GNU Affero General Public License v3.0
      826290Updated Feb 22, 2025Feb 22, 2025
    • Unravelling three-dimensionally dynamics of spatial multi-modal data
      Jupyter Notebook
      GNU General Public License v3.0
      0500Updated Jan 22, 2025Jan 22, 2025
    • Programmable Full-length Transcriptome Sequencing
      CSS
      MIT License
      0500Updated Jul 9, 2024Jul 9, 2024
    • CIRIquant

      Public
      circular RNA quantification tools
      Perl
      MIT License
      1931352Updated Jun 17, 2024Jun 17, 2024
    • CIRI-long

      Public
      Circular RNA Identification for Nanopore Sequencing
      Python
      MIT License
      622130Updated May 23, 2024May 23, 2024
    • CIRI-full

      Public
      Full length circRNA reconstruction and quantification using BSJ and reverse overlap (RO) features.
      Perl
      2430Updated Mar 15, 2024Mar 15, 2024
    • 0000Updated Mar 9, 2024Mar 9, 2024
    • Document for CIRI-series software
      Python
      15200Updated Nov 30, 2023Nov 30, 2023
    • CIRI-vis

      Public
      Visualization of circular RNAs and their internal splicing events from transcriptomic data.
      0030Updated Sep 3, 2023Sep 3, 2023
    • Analysis code for FMT enterotype paper
      HTML
      GNU General Public License v3.0
      0420Updated Dec 21, 2022Dec 21, 2022
    • Zhaolab

      Public
      Zhaolab
      0100Updated Jun 14, 2022Jun 14, 2022
    • Analysis pipeline for our circSC manuscript
      Python
      GNU General Public License v3.0
      51400Updated May 18, 2022May 18, 2022
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