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@bioruby BioRuby Project

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    14 repositories

    • bioruby-mcp-server

      Public
      Ruby
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • bioruby

      Public
      bioruby
      Ruby
      •
      Other
      •108•381•11•4•Updated Sep 19, 2025Sep 19, 2025

    • bioruby.github.io

      Public
      HTML
      •1•0•0•0•Updated Mar 8, 2025Mar 8, 2025

    • bioruby-shell

      Public
      BioRuby Shell: Interactive command line interface for BioRuby
      Ruby
      •
      Other
      •1•2•0•0•Updated Nov 8, 2021Nov 8, 2021

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.9k•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • documents

      Public
      Executable BioRuby documents with rubydown and Jupyter Notebook
      HTML
      •0•6•1•0•Updated Sep 2, 2019Sep 2, 2019

    • bioruby-blast-xmlparser

      Public
      BioRuby BLAST XMLParser Plugin
      Ruby
      •
      Other
      •0•0•0•0•Updated Jun 14, 2019Jun 14, 2019

    • bioruby-executables

      Public
      Ruby
      •
      Other
      •0•1•0•0•Updated Jun 14, 2019Jun 14, 2019

    • bioruby-notebooks

      Public
      IRuby Notebooks for BioRuby
      Jupyter Notebook
      •1•0•0•0•Updated Jun 25, 2016Jun 25, 2016

    • bioruby-biosql

      Public
      BioSQL support of BioRuby
      Ruby
      •
      Other
      •0•1•0•0•Updated Jun 17, 2016Jun 17, 2016

    • bioruby-phyloxml

      Public
      phyloXML support for Ruby
      Ruby
      •
      Other
      •0•0•0•0•Updated Jun 15, 2016Jun 15, 2016

    • bioruby.org-webpage

      Public
      web pages for bioruby.org
      HTML
      •1•1•0•0•Updated Jul 2, 2015Jul 2, 2015

    • biogems.info

      Public
      Tools for keeping track of biogems
      Ruby
      •13•1•0•0•Updated Dec 30, 2013Dec 30, 2013

    • NA-BioRuby.org

      Public
      New age BioRuby website
      Ruby
      •2•1•0•0•Updated Mar 22, 2012Mar 22, 2012
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